| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is gltX [H]
Identifier: 189183880
GI number: 189183880
Start: 1022339
End: 1023787
Strand: Direct
Name: gltX [H]
Synonym: OTT_0973
Alternate gene names: 189183880
Gene position: 1022339-1023787 (Clockwise)
Preceding gene: 189183879
Following gene: 189183882
Centisome position: 50.89
GC content: 31.88
Gene sequence:
>1449_bases GTGTATCTAACTTATAGTAATATTATGACAAATATAGTAACAAGATTTGCTCCTTCGCCAACTGGTTTTTTACATATTGG AGGAGCTCGTACTGCTCTTTTTAATTATTTATTTGCTAGACACCATAAAGGCAAGTTTTTGCTTCGTATTGAGGATACTG ATGCTGCTAGATCAACTGAAGAATATAAACTCGGTATTATAGATAGCTTAAAATGGTTAAAAATAAATTGGGATAATGAT ATTTTTTATCAGTCTGCAAATCTACAAAGGCATGTGAATGTAGCTTTAGAACTAGTAAAGAGTGGTAAAGCTTACTATTG TTTTACTTCTCAAGAAGAAATTGATCTCCAAAGACAATTAGCTATTGCACAGAAGCAAAGTTTTATCTTTAGGAGTCCAT GGCGCAATAACATTCCTTCTTCATTATCATTAAAGAATAATAATAAAGCATATGTTATTCGGTTTAAAGCTCCAAATCAT GGTACTACTATAATTAATGACTACGTACAAGGTAAGGTAGTATTTCAAAATCAACAGATTGATGATATGATTTTAGTACG AAGTGATGGTACACCAACTTACATGTTAGCAGTAGTAGTAGATGATCATGATATGGGTATTACACATATTATCCGTGGAG ATGATCATCTTACGAACGCAGCTAAACAAATAGCATTATATGATGCTTTAGGTTGGAAAGCACCAGCTATGGTTCATATA CCATTGATTTATGGACCTGATGGAACCAAATTATCTAAAAGGCATGGCGCTATTGGTGTTGATGCATATCAAAAAATGGG CTATTTGCCTGAAGCTTTATGCAATTATCTATTAAGATTAGGGTGGAGCTACCAAGATGAAGAGATAATATCTCATGAGC GTGCTATAAAGCTGTTTGACATAGATGGATTAGGTAAGTCTGCAGCTAGATTAGATTTTGATAAAATGTTGTATTTAAAC GGTTATTATATTCGTAGCACTGATAATTCTATACTAGCAAAACTAGTAATTGAGATACTATCTAAGCAATATATCCTTAG TAATGAAAGTTGCAATTTGATTCAAAAAGGAATGTCGGGCTTAAAAAGCAGAGCTAATTTACTGACAGATCTTGCTGAAA ATGCCAAAATATATGTTTTGGAAAATCAGTTAACTTTTGTCAACGAAGCTTTAAATATTATTCAAAAAACTCCTTCTATG TTAATTACAGAAGTTATTGATATTATTAACAATTTGCAGGAATTAAACTGTGAGTCAGTCAAACAATCTCTTACAGAATT TGCTAAGGTAAAACATATGAAATTGGGGCAGTTAATGGATCCAATTCGAGCATTATTAACTGGTAATACTAAATCACCTA GCATATTTGAAGTTATTCCAATATTAGGTAAAATACATGCAGTTAAACGTTTAGCTGATATTGAGGCTATAAAATCAAAC AATCAATAG
Upstream 100 bases:
>100_bases TTTATAAAAGATTATTTTTCTCAGATATTTTTTATTATATCTTACATTTTGCAGAATGGATATTATATCGAACTTGTGTT ACAGATAACATTAAATCTTA
Downstream 100 bases:
>100_bases TGTGTAAATTATAGTGCAAAAGAGTTACCGCAGCCACATTTAGCTTGGGCTGCTGGATTAGTAATTTTAAAATATGAACG TCCTAACTCTTCTATATACT
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase 1; GluRS 1 [H]
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MYLTYSNIMTNIVTRFAPSPTGFLHIGGARTALFNYLFARHHKGKFLLRIEDTDAARSTEEYKLGIIDSLKWLKINWDND IFYQSANLQRHVNVALELVKSGKAYYCFTSQEEIDLQRQLAIAQKQSFIFRSPWRNNIPSSLSLKNNNKAYVIRFKAPNH GTTIINDYVQGKVVFQNQQIDDMILVRSDGTPTYMLAVVVDDHDMGITHIIRGDDHLTNAAKQIALYDALGWKAPAMVHI PLIYGPDGTKLSKRHGAIGVDAYQKMGYLPEALCNYLLRLGWSYQDEEIISHERAIKLFDIDGLGKSAARLDFDKMLYLN GYYIRSTDNSILAKLVIEILSKQYILSNESCNLIQKGMSGLKSRANLLTDLAENAKIYVLENQLTFVNEALNIIQKTPSM LITEVIDIINNLQELNCESVKQSLTEFAKVKHMKLGQLMDPIRALLTGNTKSPSIFEVIPILGKIHAVKRLADIEAIKSN NQ
Sequences:
>Translated_482_residues MYLTYSNIMTNIVTRFAPSPTGFLHIGGARTALFNYLFARHHKGKFLLRIEDTDAARSTEEYKLGIIDSLKWLKINWDND IFYQSANLQRHVNVALELVKSGKAYYCFTSQEEIDLQRQLAIAQKQSFIFRSPWRNNIPSSLSLKNNNKAYVIRFKAPNH GTTIINDYVQGKVVFQNQQIDDMILVRSDGTPTYMLAVVVDDHDMGITHIIRGDDHLTNAAKQIALYDALGWKAPAMVHI PLIYGPDGTKLSKRHGAIGVDAYQKMGYLPEALCNYLLRLGWSYQDEEIISHERAIKLFDIDGLGKSAARLDFDKMLYLN GYYIRSTDNSILAKLVIEILSKQYILSNESCNLIQKGMSGLKSRANLLTDLAENAKIYVLENQLTFVNEALNIIQKTPSM LITEVIDIINNLQELNCESVKQSLTEFAKVKHMKLGQLMDPIRALLTGNTKSPSIFEVIPILGKIHAVKRLADIEAIKSN NQ >Mature_482_residues MYLTYSNIMTNIVTRFAPSPTGFLHIGGARTALFNYLFARHHKGKFLLRIEDTDAARSTEEYKLGIIDSLKWLKINWDND IFYQSANLQRHVNVALELVKSGKAYYCFTSQEEIDLQRQLAIAQKQSFIFRSPWRNNIPSSLSLKNNNKAYVIRFKAPNH GTTIINDYVQGKVVFQNQQIDDMILVRSDGTPTYMLAVVVDDHDMGITHIIRGDDHLTNAAKQIALYDALGWKAPAMVHI PLIYGPDGTKLSKRHGAIGVDAYQKMGYLPEALCNYLLRLGWSYQDEEIISHERAIKLFDIDGLGKSAARLDFDKMLYLN GYYIRSTDNSILAKLVIEILSKQYILSNESCNLIQKGMSGLKSRANLLTDLAENAKIYVLENQLTFVNEALNIIQKTPSM LITEVIDIINNLQELNCESVKQSLTEFAKVKHMKLGQLMDPIRALLTGNTKSPSIFEVIPILGKIHAVKRLADIEAIKSN NQ
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=500, Percent_Identity=30, Blast_Score=206, Evalue=6e-53, Organism=Homo sapiens, GI62241042, Length=233, Percent_Identity=25.3218884120172, Blast_Score=76, Evalue=8e-14, Organism=Escherichia coli, GI1788743, Length=475, Percent_Identity=36.8421052631579, Blast_Score=331, Evalue=7e-92, Organism=Escherichia coli, GI226510925, Length=250, Percent_Identity=35.2, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1786895, Length=109, Percent_Identity=33.9449541284404, Blast_Score=74, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71993394, Length=483, Percent_Identity=33.5403726708075, Blast_Score=219, Evalue=4e-57, Organism=Saccharomyces cerevisiae, GI6324540, Length=489, Percent_Identity=34.1513292433538, Blast_Score=238, Evalue=1e-63, Organism=Saccharomyces cerevisiae, GI6321192, Length=218, Percent_Identity=28.8990825688073, Blast_Score=95, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6324742, Length=108, Percent_Identity=36.1111111111111, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24665321, Length=489, Percent_Identity=32.9243353783231, Blast_Score=246, Evalue=3e-65, Organism=Drosophila melanogaster, GI24649466, Length=236, Percent_Identity=25.8474576271186, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17864488, Length=133, Percent_Identity=34.5864661654135, Blast_Score=69, Evalue=8e-12,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 54563; Mature: 54563
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYLTYSNIMTNIVTRFAPSPTGFLHIGGARTALFNYLFARHHKGKFLLRIEDTDAARSTE CEEEHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC EYKLGIIDSLKWLKINWDNDIFYQSANLQRHVNVALELVKSGKAYYCFTSQEEIDLQRQL CEEEEEECCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH AIAQKQSFIFRSPWRNNIPSSLSLKNNNKAYVIRFKAPNHGTTIINDYVQGKVVFQNQQI HHHHHHHHEEECCCCCCCCCCEEEECCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCC DDMILVRSDGTPTYMLAVVVDDHDMGITHIIRGDDHLTNAAKQIALYDALGWKAPAMVHI CCEEEEECCCCCEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEE PLIYGPDGTKLSKRHGAIGVDAYQKMGYLPEALCNYLLRLGWSYQDEEIISHERAIKLFD EEEECCCCCCCHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCEEEEEE IDGLGKSAARLDFDKMLYLNGYYIRSTDNSILAKLVIEILSKQYILSNESCNLIQKGMSG ECCCCCHHHHCCHHHEEEEECEEEEECCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHH LKSRANLLTDLAENAKIYVLENQLTFVNEALNIIQKTPSMLITEVIDIINNLQELNCESV HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHH KQSLTEFAKVKHMKLGQLMDPIRALLTGNTKSPSIFEVIPILGKIHAVKRLADIEAIKSN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NQ CC >Mature Secondary Structure MYLTYSNIMTNIVTRFAPSPTGFLHIGGARTALFNYLFARHHKGKFLLRIEDTDAARSTE CEEEHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC EYKLGIIDSLKWLKINWDNDIFYQSANLQRHVNVALELVKSGKAYYCFTSQEEIDLQRQL CEEEEEECCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHH AIAQKQSFIFRSPWRNNIPSSLSLKNNNKAYVIRFKAPNHGTTIINDYVQGKVVFQNQQI HHHHHHHHEEECCCCCCCCCCEEEECCCEEEEEEEECCCCCCEEEECCCCCEEEEECCCC DDMILVRSDGTPTYMLAVVVDDHDMGITHIIRGDDHLTNAAKQIALYDALGWKAPAMVHI CCEEEEECCCCCEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEE PLIYGPDGTKLSKRHGAIGVDAYQKMGYLPEALCNYLLRLGWSYQDEEIISHERAIKLFD EEEECCCCCCCHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHCEEEEEE IDGLGKSAARLDFDKMLYLNGYYIRSTDNSILAKLVIEILSKQYILSNESCNLIQKGMSG ECCCCCHHHHCCHHHEEEEECEEEEECCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHH LKSRANLLTDLAENAKIYVLENQLTFVNEALNIIQKTPSMLITEVIDIINNLQELNCESV HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHH KQSLTEFAKVKHMKLGQLMDPIRALLTGNTKSPSIFEVIPILGKIHAVKRLADIEAIKSN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC NQ CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA