| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183878
Identifier: 189183878
GI number: 189183878
Start: 1017748
End: 1019352
Strand: Reverse
Name: 189183878
Synonym: OTT_0971
Alternate gene names: NA
Gene position: 1019352-1017748 (Counterclockwise)
Preceding gene: 189183881
Following gene: 189183877
Centisome position: 50.74
GC content: 24.98
Gene sequence:
>1605_bases TTGCTACTAAAATTTAAACAATTGATATCTCGCGTTATATTTAAATCCTCTATAATAATATATTTAGGAAAGATTGGAGC TTCTATTGTAGTAATATCTAACAATAGCATCATTGAAGACATGTTTTTAACATATGATACTGATGGAGTACATAAATTCA ATAAGTTTCAAGAATTACTTAGCAGATACGCTGGTTATAGTGTATCTATACTAATTGATTTGCCAGAAATAAAGTTACAG CAAGAATTTTTGATTGCTATAGAAACTGGAATAAAAAAAAATCCAGTTGATAACTATATTAAGCAACATTTTGGCTCAAA CAGTATAATTGGCTATTATATACTTAATATTACTTATAATGGCAGTGAACTATGGCAAGCACAAATTGCTTCAATAGAAT TAAATCACATTATCAAAACATTTGTTGATGAAATTATTGTACGTTCAGAAATAACATTTTCTGGATTATTTTTGTGTCCT TTAGAAATTCCTAAAATTATACATACATTATTAAAGTCAAATATTAAAACTATATGTAATATTATGCAACATATAGCTAA CTCCACAGTGTTTCAAATAACAAAAACACAATATATATCCCTTCAACAAACTAATTATCTTACTACTAAAACAAAGCTGT TCAAAAAAGCTTATGAAAATAATATAATTCTGATAGTATGTATTACTAAAGCAAATGGTATTACATTTTGTTTATTCAAT CAGCAGAATATTATTTTTAGTAACACAATACCATATTGCGCTACTAAAAGCCCTGAGTATATATATGGTATACTAAAGTA TGAATCTAATGAGATATTATCATCATTTAAGTTATATATTCTAGAATTAAATAAAAAAGTAATAATTCACTACTTAGTTG ATGAACAAATTCAAAAATTTATAGAAAAGGACTCTAACAGTTACACTGATACTATCATTACAACTATTCCAAATACTTAT TCTGATCAATTAATATCTCAGTTATTTAATTACTGTTCTATACGCTGTGCTTATAACAAATATCTAGATGAATTCAATAA GTTAAGAAAATTTAATTCAGTATTTTTACGATTTGTATTGATAGCAGTAATAATATTATTCTCTAGCCTAATTAGAACCT GGTATAAAGTATTCGTTCAAAAAAAAGCTCTAGCTAATTTTTATGAACAAATTAATACAATTAGTGCAAATCAACATAAA GCTGAACTTGAGTTAGCAGCTTCTTATAATATATCATCAGATATTATTGAAAGTTATTACCTTGATAAGCACATTAATTC TAAGCATTATACTATAGCTTTAGATGCATTAAAGTTATTATTGCATGATCCAAATATAGAAATACAGAAAATAACATACA CACTTAATGAGCAACTACCTAGAAACGAGTTACTCATGTCTATTGAAGTAAAATTCTATTATTTAAATAATACTACTGTA AACCTAGAAGATTGTTTAATTCAATTAGAAAAATATAATGCTAATATTATCGAGATATTTAAAAATTATGAAGTTAATTT AACATCTTTAGGACAAGAAATATGTAGCCATTCTAATGTATCAAGAAAATTGCTAACCATGTCTATTAGTAGGATAGTTA ATTAA
Upstream 100 bases:
>100_bases TAGGCTAGTTGCTATAAGTTCGAAAAACATAGTATAATGTACAATATATACTGTTCTAATAGCTTATGCTACATTTTTAT AGTTGCGATTAATGAATATA
Downstream 100 bases:
>100_bases TATGATAAACCAACGCATTATTTATCTCAAAAACCTAATATGTTTCAAGATAGTGCTATATGGCATAATAATATTATTAT GCCATATTTATGGTTCATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MLLKFKQLISRVIFKSSIIIYLGKIGASIVVISNNSIIEDMFLTYDTDGVHKFNKFQELLSRYAGYSVSILIDLPEIKLQ QEFLIAIETGIKKNPVDNYIKQHFGSNSIIGYYILNITYNGSELWQAQIASIELNHIIKTFVDEIIVRSEITFSGLFLCP LEIPKIIHTLLKSNIKTICNIMQHIANSTVFQITKTQYISLQQTNYLTTKTKLFKKAYENNIILIVCITKANGITFCLFN QQNIIFSNTIPYCATKSPEYIYGILKYESNEILSSFKLYILELNKKVIIHYLVDEQIQKFIEKDSNSYTDTIITTIPNTY SDQLISQLFNYCSIRCAYNKYLDEFNKLRKFNSVFLRFVLIAVIILFSSLIRTWYKVFVQKKALANFYEQINTISANQHK AELELAASYNISSDIIESYYLDKHINSKHYTIALDALKLLLHDPNIEIQKITYTLNEQLPRNELLMSIEVKFYYLNNTTV NLEDCLIQLEKYNANIIEIFKNYEVNLTSLGQEICSHSNVSRKLLTMSISRIVN
Sequences:
>Translated_534_residues MLLKFKQLISRVIFKSSIIIYLGKIGASIVVISNNSIIEDMFLTYDTDGVHKFNKFQELLSRYAGYSVSILIDLPEIKLQ QEFLIAIETGIKKNPVDNYIKQHFGSNSIIGYYILNITYNGSELWQAQIASIELNHIIKTFVDEIIVRSEITFSGLFLCP LEIPKIIHTLLKSNIKTICNIMQHIANSTVFQITKTQYISLQQTNYLTTKTKLFKKAYENNIILIVCITKANGITFCLFN QQNIIFSNTIPYCATKSPEYIYGILKYESNEILSSFKLYILELNKKVIIHYLVDEQIQKFIEKDSNSYTDTIITTIPNTY SDQLISQLFNYCSIRCAYNKYLDEFNKLRKFNSVFLRFVLIAVIILFSSLIRTWYKVFVQKKALANFYEQINTISANQHK AELELAASYNISSDIIESYYLDKHINSKHYTIALDALKLLLHDPNIEIQKITYTLNEQLPRNELLMSIEVKFYYLNNTTV NLEDCLIQLEKYNANIIEIFKNYEVNLTSLGQEICSHSNVSRKLLTMSISRIVN >Mature_534_residues MLLKFKQLISRVIFKSSIIIYLGKIGASIVVISNNSIIEDMFLTYDTDGVHKFNKFQELLSRYAGYSVSILIDLPEIKLQ QEFLIAIETGIKKNPVDNYIKQHFGSNSIIGYYILNITYNGSELWQAQIASIELNHIIKTFVDEIIVRSEITFSGLFLCP LEIPKIIHTLLKSNIKTICNIMQHIANSTVFQITKTQYISLQQTNYLTTKTKLFKKAYENNIILIVCITKANGITFCLFN QQNIIFSNTIPYCATKSPEYIYGILKYESNEILSSFKLYILELNKKVIIHYLVDEQIQKFIEKDSNSYTDTIITTIPNTY SDQLISQLFNYCSIRCAYNKYLDEFNKLRKFNSVFLRFVLIAVIILFSSLIRTWYKVFVQKKALANFYEQINTISANQHK AELELAASYNISSDIIESYYLDKHINSKHYTIALDALKLLLHDPNIEIQKITYTLNEQLPRNELLMSIEVKFYYLNNTTV NLEDCLIQLEKYNANIIEIFKNYEVNLTSLGQEICSHSNVSRKLLTMSISRIVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61914; Mature: 61914
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLKFKQLISRVIFKSSIIIYLGKIGASIVVISNNSIIEDMFLTYDTDGVHKFNKFQELL CCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCEEEHHHEEECCCCCHHHHHHHHHH SRYAGYSVSILIDLPEIKLQQEFLIAIETGIKKNPVDNYIKQHFGSNSIIGYYILNITYN HHHCCCEEEEEEECCCCHHCHHHEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEC GSELWQAQIASIELNHIIKTFVDEIIVRSEITFSGLFLCPLEIPKIIHTLLKSNIKTICN CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH IMQHIANSTVFQITKTQYISLQQTNYLTTKTKLFKKAYENNIILIVCITKANGITFCLFN HHHHHCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEC QQNIIFSNTIPYCATKSPEYIYGILKYESNEILSSFKLYILELNKKVIIHYLVDEQIQKF CCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHEEEEEEECCEEEEEHHHHHHHHHH IEKDSNSYTDTIITTIPNTYSDQLISQLFNYCSIRCAYNKYLDEFNKLRKFNSVFLRFVL HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH IAVIILFSSLIRTWYKVFVQKKALANFYEQINTISANQHKAELELAASYNISSDIIESYY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHH LDKHINSKHYTIALDALKLLLHDPNIEIQKITYTLNEQLPRNELLMSIEVKFYYLNNTTV HHHCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCEE NLEDCLIQLEKYNANIIEIFKNYEVNLTSLGQEICSHSNVSRKLLTMSISRIVN EHHHHHHHHHHCCCHHEEEHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MLLKFKQLISRVIFKSSIIIYLGKIGASIVVISNNSIIEDMFLTYDTDGVHKFNKFQELL CCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCEEEHHHEEECCCCCHHHHHHHHHH SRYAGYSVSILIDLPEIKLQQEFLIAIETGIKKNPVDNYIKQHFGSNSIIGYYILNITYN HHHCCCEEEEEEECCCCHHCHHHEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEEEEEC GSELWQAQIASIELNHIIKTFVDEIIVRSEITFSGLFLCPLEIPKIIHTLLKSNIKTICN CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH IMQHIANSTVFQITKTQYISLQQTNYLTTKTKLFKKAYENNIILIVCITKANGITFCLFN HHHHHCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEC QQNIIFSNTIPYCATKSPEYIYGILKYESNEILSSFKLYILELNKKVIIHYLVDEQIQKF CCCEEEECCCCCCCCCCCCCEEEEEEECCHHHHHHHEEEEEEECCEEEEEHHHHHHHHHH IEKDSNSYTDTIITTIPNTYSDQLISQLFNYCSIRCAYNKYLDEFNKLRKFNSVFLRFVL HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHH IAVIILFSSLIRTWYKVFVQKKALANFYEQINTISANQHKAELELAASYNISSDIIESYY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHH LDKHINSKHYTIALDALKLLLHDPNIEIQKITYTLNEQLPRNELLMSIEVKFYYLNNTTV HHHCCCCCEEEEEHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEECCCEE NLEDCLIQLEKYNANIIEIFKNYEVNLTSLGQEICSHSNVSRKLLTMSISRIVN EHHHHHHHHHHCCCHHEEEHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]