| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is secA1 [H]
Identifier: 189183868
GI number: 189183868
Start: 1005106
End: 1007745
Strand: Reverse
Name: secA1 [H]
Synonym: OTT_0961
Alternate gene names: 189183868
Gene position: 1007745-1005106 (Counterclockwise)
Preceding gene: 189183870
Following gene: 189183863
Centisome position: 50.16
GC content: 32.42
Gene sequence:
>2640_bases ATGTTAAAATTTATAAAAAGTATATTTAAAACGCCTAGCGATAGAATTATCGCAAATCTTAAATCAAAAATTCAACAAGT CCATAGCGCCGAAAGCAGCTTAGCTAAACTTAGTAATATCGAGCTAAGAAACAAAACTAATGAATTTAAAGCTCGCCTAG CTAACAACGAGCCTATCGACAATATACAATATGAGGCTTTTGCAGTAGTAAGGGAAGCAGCAAAAAGAACTATAGGAATA CAACATTATGACGAACAACTAATTGGAGGAATATTGTTGCATCAAGGTAAAGTTATAGAAATGAGCACAGGCGAAGGAAA AACATTAGTAGCAACACTACCATCATATTTAAATGCTCTTATTGGTAAGGGAGTTCACGTTGTTACAGTAAATGACTATT TAGCTCAAAGAGATAGTGATTGGATGGGCACAATTCACAGATTCTTAGATATAACAGTAGGCTGTATTACTAGCAATACC AATGAGCACGCAAGAAAAATTGCTTATAATAGTGATATTACCTACATAACTAATAATGAGCTAGGATTTGACTTTTTACG AGATAATATGCAATTTACTAATCAATCAAAAGTTCAGAGAGGTTGTAACTATGCAATTATTGATGAAATAGACTCAATTT TGATTGATGAAGCTAGAACTCCTCTAATTATTTCTGGCCCTGTAAGTGACAATACATCATTATATCCAATAATTAACAAA CTAATAACAAAACTTAATAAAGATGACTATGAAATGGATGAAAAACTACGTAATGTCACTCTCACAGATTCAGGAATTAA TAAATTAGAAACAATGCTTGCTGAAATCAACATACTAGCTCCTAATAGCAATAGCTTGTACGATTTTGAAAATATGCACC TAATTCATTATATTAACCAATCTCTAAAAGCACATACACTTTTTCGCCGTAATGTTGATTATCTAGTTAAGAATGGAAAG GTTATTATCATTGACGAATTTACTGGCAGAACAATGGACAGCAGAAGATATTCTGAGGGACTACACCAAGCATTAGAAGC TAAAGAAAAAGTTGAAATTCAAAATGAGAATCAGACATTAGCCTCAATTACCTTTCAAAACTACTTTAGAATGTATACAA AACTATCCGGTATGACTGGTACTGCTATGACAGAAGCCACAGAGCTGAAAGAAATATATGATTTAGATGTCGTCACTGTT CCTACTCATAATCCAGTACAGAGAATAGATTATAATGATGAAATATATAGTACTAAGAAAGACAAATATAGTGCTATAAT TCAACTAATTCAAGAATGCTATTCTAAAGGCCAACCAGTACTTGTTGGAACTGTTAGCATTGAAAAATCCGAAGAATTAT CTAAGCTTTTACATAGCAAAAAGATTCCTCATAATGTTCTGAACGCTAAACATCACGATAAAGAAGCTTCAATTATTGCT CAAGCAGGTAGAATAAAAGCAATCACCATCGCAACAAACATGGCAGGCCGTGGTACAGATATAATGTTAGGCGGAAATGC TGAAATGCTAGTAGATCAGTCTAATTTAACGGAAGAAGAATATCAAGAAAAGTTAAAAATAACTAAGATGCAGATAGAAC AAGAAAAAGAGCAAGTCATTAATGCTGGAGGGCTTTTTGTGATCGGAACTGAGAGACATGAAAGCAGAAGAATAGATAAT CAGTTACGAGGAAGATGTGGACGACAAGGCGATCCAGGACAAACAAAATTTTTTCTATCTTTAGAAGATGATTTAATGCG AATTTTTGCTTCTGATAGAGTAACAAAAATTTTACGTACAATAGGATTAAAAGACGGAGAGGCTATTCATCACCCTTTAA TTAATAGATCTTTAGCAACTGCTCAACAAAAAATCGAAGCCCAGAATTACGAAATTAGAAAAAATTTATTAAAATATGAC AATGTGATGAACGATCAGAGAAAAGTGATATACGAACAACGAAATGAAGCAATCAGCTCTGATAATGTTAATGAAATACT ACATAATTTAACTGAAGAACTAATTGTAGAAACTGTACACAAATTTATTCCACCAAAATCTTACAAAGAGGATTGGAATA TTCATGAACTGCTTAAAGAATACCATCATATATTTAATGTTAAGCTGCAACCAGCTTCTATTGAAGCTACATCTAGTTCA TCAGAAGTAATAGAGTATCTTACTAAGACTGCTCTTGATATATACAAACAACAAGAACAGGATTATTCAGCTAAATCAGC TAATGAGGCTATTAAACATATTTTCATTAAAACTTTAGATCAGACCTGGAAGGAACATTTATACACATTGGACCACTTAA AACAAGGAATATCGTTAAGGGCATATGGACAAAAAGATCCTCTTAACGAATATAAAAGAGAGGCATTTGATTTGTTTAAA CAAATGCTATTGCACTTAAAATACCTTTTTATTCAAAGAGTAGCTCGGTTACATATTGATTTAGCTTCTTCGCCAAAAAG TACTAGTTCTTTATTAGAGACCTCAGATAATAACCTTAAAGGCAAAATTATTACTGAAAATTCTATGGCCCATAAATATT TTGGGAAAATATCTCGTAATCAATTATGCCCATGCAATTCAGGAAAAAAGTTCAAACATTGCCATGGCGCATTAAAGTAA
Upstream 100 bases:
>100_bases ATCTAATATAATCTACCAATAACAACTAACTCTTTACTTTCGATTCTATCGCTTATAATTAAAAAGTAAAATAATCCTAA ATCGACATATTTTAAGAATG
Downstream 100 bases:
>100_bases TAAAAGTTTGATCTAATAAGTCATATGCCAGAATACAAGAAGTAAAAAAGAATGATTATTCAAAAAAAAGATAATAAAAA TATTTATTAGACATATACGA
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MLKFIKSIFKTPSDRIIANLKSKIQQVHSAESSLAKLSNIELRNKTNEFKARLANNEPIDNIQYEAFAVVREAAKRTIGI QHYDEQLIGGILLHQGKVIEMSTGEGKTLVATLPSYLNALIGKGVHVVTVNDYLAQRDSDWMGTIHRFLDITVGCITSNT NEHARKIAYNSDITYITNNELGFDFLRDNMQFTNQSKVQRGCNYAIIDEIDSILIDEARTPLIISGPVSDNTSLYPIINK LITKLNKDDYEMDEKLRNVTLTDSGINKLETMLAEINILAPNSNSLYDFENMHLIHYINQSLKAHTLFRRNVDYLVKNGK VIIIDEFTGRTMDSRRYSEGLHQALEAKEKVEIQNENQTLASITFQNYFRMYTKLSGMTGTAMTEATELKEIYDLDVVTV PTHNPVQRIDYNDEIYSTKKDKYSAIIQLIQECYSKGQPVLVGTVSIEKSEELSKLLHSKKIPHNVLNAKHHDKEASIIA QAGRIKAITIATNMAGRGTDIMLGGNAEMLVDQSNLTEEEYQEKLKITKMQIEQEKEQVINAGGLFVIGTERHESRRIDN QLRGRCGRQGDPGQTKFFLSLEDDLMRIFASDRVTKILRTIGLKDGEAIHHPLINRSLATAQQKIEAQNYEIRKNLLKYD NVMNDQRKVIYEQRNEAISSDNVNEILHNLTEELIVETVHKFIPPKSYKEDWNIHELLKEYHHIFNVKLQPASIEATSSS SEVIEYLTKTALDIYKQQEQDYSAKSANEAIKHIFIKTLDQTWKEHLYTLDHLKQGISLRAYGQKDPLNEYKREAFDLFK QMLLHLKYLFIQRVARLHIDLASSPKSTSSLLETSDNNLKGKIITENSMAHKYFGKISRNQLCPCNSGKKFKHCHGALK
Sequences:
>Translated_879_residues MLKFIKSIFKTPSDRIIANLKSKIQQVHSAESSLAKLSNIELRNKTNEFKARLANNEPIDNIQYEAFAVVREAAKRTIGI QHYDEQLIGGILLHQGKVIEMSTGEGKTLVATLPSYLNALIGKGVHVVTVNDYLAQRDSDWMGTIHRFLDITVGCITSNT NEHARKIAYNSDITYITNNELGFDFLRDNMQFTNQSKVQRGCNYAIIDEIDSILIDEARTPLIISGPVSDNTSLYPIINK LITKLNKDDYEMDEKLRNVTLTDSGINKLETMLAEINILAPNSNSLYDFENMHLIHYINQSLKAHTLFRRNVDYLVKNGK VIIIDEFTGRTMDSRRYSEGLHQALEAKEKVEIQNENQTLASITFQNYFRMYTKLSGMTGTAMTEATELKEIYDLDVVTV PTHNPVQRIDYNDEIYSTKKDKYSAIIQLIQECYSKGQPVLVGTVSIEKSEELSKLLHSKKIPHNVLNAKHHDKEASIIA QAGRIKAITIATNMAGRGTDIMLGGNAEMLVDQSNLTEEEYQEKLKITKMQIEQEKEQVINAGGLFVIGTERHESRRIDN QLRGRCGRQGDPGQTKFFLSLEDDLMRIFASDRVTKILRTIGLKDGEAIHHPLINRSLATAQQKIEAQNYEIRKNLLKYD NVMNDQRKVIYEQRNEAISSDNVNEILHNLTEELIVETVHKFIPPKSYKEDWNIHELLKEYHHIFNVKLQPASIEATSSS SEVIEYLTKTALDIYKQQEQDYSAKSANEAIKHIFIKTLDQTWKEHLYTLDHLKQGISLRAYGQKDPLNEYKREAFDLFK QMLLHLKYLFIQRVARLHIDLASSPKSTSSLLETSDNNLKGKIITENSMAHKYFGKISRNQLCPCNSGKKFKHCHGALK >Mature_879_residues MLKFIKSIFKTPSDRIIANLKSKIQQVHSAESSLAKLSNIELRNKTNEFKARLANNEPIDNIQYEAFAVVREAAKRTIGI QHYDEQLIGGILLHQGKVIEMSTGEGKTLVATLPSYLNALIGKGVHVVTVNDYLAQRDSDWMGTIHRFLDITVGCITSNT NEHARKIAYNSDITYITNNELGFDFLRDNMQFTNQSKVQRGCNYAIIDEIDSILIDEARTPLIISGPVSDNTSLYPIINK LITKLNKDDYEMDEKLRNVTLTDSGINKLETMLAEINILAPNSNSLYDFENMHLIHYINQSLKAHTLFRRNVDYLVKNGK VIIIDEFTGRTMDSRRYSEGLHQALEAKEKVEIQNENQTLASITFQNYFRMYTKLSGMTGTAMTEATELKEIYDLDVVTV PTHNPVQRIDYNDEIYSTKKDKYSAIIQLIQECYSKGQPVLVGTVSIEKSEELSKLLHSKKIPHNVLNAKHHDKEASIIA QAGRIKAITIATNMAGRGTDIMLGGNAEMLVDQSNLTEEEYQEKLKITKMQIEQEKEQVINAGGLFVIGTERHESRRIDN QLRGRCGRQGDPGQTKFFLSLEDDLMRIFASDRVTKILRTIGLKDGEAIHHPLINRSLATAQQKIEAQNYEIRKNLLKYD NVMNDQRKVIYEQRNEAISSDNVNEILHNLTEELIVETVHKFIPPKSYKEDWNIHELLKEYHHIFNVKLQPASIEATSSS SEVIEYLTKTALDIYKQQEQDYSAKSANEAIKHIFIKTLDQTWKEHLYTLDHLKQGISLRAYGQKDPLNEYKREAFDLFK QMLLHLKYLFIQRVARLHIDLASSPKSTSSLLETSDNNLKGKIITENSMAHKYFGKISRNQLCPCNSGKKFKHCHGALK
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=910, Percent_Identity=48.1318681318681, Blast_Score=860, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 100404; Mature: 100404
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKFIKSIFKTPSDRIIANLKSKIQQVHSAESSLAKLSNIELRNKTNEFKARLANNEPID CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCC NIQYEAFAVVREAAKRTIGIQHYDEQLIGGILLHQGKVIEMSTGEGKTLVATLPSYLNAL CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHH IGKGVHVVTVNDYLAQRDSDWMGTIHRFLDITVGCITSNTNEHARKIAYNSDITYITNNE HHCCEEEEEECHHHHHCCCHHHHHHHHHHHHHHEEEECCCHHHHHHHEECCCEEEEECCC LGFDFLRDNMQFTNQSKVQRGCNYAIIDEIDSILIDEARTPLIISGPVSDNTSLYPIINK CCHHHHHCCHHHCCHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHH LITKLNKDDYEMDEKLRNVTLTDSGINKLETMLAEINILAPNSNSLYDFENMHLIHYINQ HHHHCCCCCHHHHHHHHCEEECCCHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHH SLKAHTLFRRNVDYLVKNGKVIIIDEFTGRTMDSRRYSEGLHQALEAKEKVEIQNENQTL HHHHHHHHHHCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEECCCCCCH ASITFQNYFRMYTKLSGMTGTAMTEATELKEIYDLDVVTVPTHNPVQRIDYNDEIYSTKK HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCHHHCCCH DKYSAIIQLIQECYSKGQPVLVGTVSIEKSEELSKLLHSKKIPHNVLNAKHHDKEASIIA HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH QAGRIKAITIATNMAGRGTDIMLGGNAEMLVDQSNLTEEEYQEKLKITKMQIEQEKEQVI HCCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH NAGGLFVIGTERHESRRIDNQLRGRCGRQGDPGQTKFFLSLEDDLMRIFASDRVTKILRT CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH IGLKDGEAIHHPLINRSLATAQQKIEAQNYEIRKNLLKYDNVMNDQRKVIYEQRNEAISS HCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC DNVNEILHNLTEELIVETVHKFIPPKSYKEDWNIHELLKEYHHIFNVKLQPASIEATSSS CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCEECCCCH SEVIEYLTKTALDIYKQQEQDYSAKSANEAIKHIFIKTLDQTWKEHLYTLDHLKQGISLR HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE AYGQKDPLNEYKREAFDLFKQMLLHLKYLFIQRVARLHIDLASSPKSTSSLLETSDNNLK ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCE GKIITENSMAHKYFGKISRNQLCPCNSGKKFKHCHGALK EEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC >Mature Secondary Structure MLKFIKSIFKTPSDRIIANLKSKIQQVHSAESSLAKLSNIELRNKTNEFKARLANNEPID CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHCCCCCCC NIQYEAFAVVREAAKRTIGIQHYDEQLIGGILLHQGKVIEMSTGEGKTLVATLPSYLNAL CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHH IGKGVHVVTVNDYLAQRDSDWMGTIHRFLDITVGCITSNTNEHARKIAYNSDITYITNNE HHCCEEEEEECHHHHHCCCHHHHHHHHHHHHHHEEEECCCHHHHHHHEECCCEEEEECCC LGFDFLRDNMQFTNQSKVQRGCNYAIIDEIDSILIDEARTPLIISGPVSDNTSLYPIINK CCHHHHHCCHHHCCHHHHHHCCCEEEHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHH LITKLNKDDYEMDEKLRNVTLTDSGINKLETMLAEINILAPNSNSLYDFENMHLIHYINQ HHHHCCCCCHHHHHHHHCEEECCCHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHH SLKAHTLFRRNVDYLVKNGKVIIIDEFTGRTMDSRRYSEGLHQALEAKEKVEIQNENQTL HHHHHHHHHHCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEECCCCCCH ASITFQNYFRMYTKLSGMTGTAMTEATELKEIYDLDVVTVPTHNPVQRIDYNDEIYSTKK HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCHHHCCCH DKYSAIIQLIQECYSKGQPVLVGTVSIEKSEELSKLLHSKKIPHNVLNAKHHDKEASIIA HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHH QAGRIKAITIATNMAGRGTDIMLGGNAEMLVDQSNLTEEEYQEKLKITKMQIEQEKEQVI HCCCEEEEEEEECCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH NAGGLFVIGTERHESRRIDNQLRGRCGRQGDPGQTKFFLSLEDDLMRIFASDRVTKILRT CCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH IGLKDGEAIHHPLINRSLATAQQKIEAQNYEIRKNLLKYDNVMNDQRKVIYEQRNEAISS HCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC DNVNEILHNLTEELIVETVHKFIPPKSYKEDWNIHELLKEYHHIFNVKLQPASIEATSSS CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEECCCCEECCCCH SEVIEYLTKTALDIYKQQEQDYSAKSANEAIKHIFIKTLDQTWKEHLYTLDHLKQGISLR HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE AYGQKDPLNEYKREAFDLFKQMLLHLKYLFIQRVARLHIDLASSPKSTSSLLETSDNNLK ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCE GKIITENSMAHKYFGKISRNQLCPCNSGKKFKHCHGALK EEEEECCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA