Click here to switch to the map view.

The map label for this gene is nagD [C]

Identifier: 189183731

GI number: 189183731

Start: 863977

End: 864837

Strand: Reverse

Name: nagD [C]

Synonym: OTT_0824

Alternate gene names: 189183731

Gene position: 864837-863977 (Counterclockwise)

Preceding gene: 189183733

Following gene: 189183730

Centisome position: 43.05

GC content: 27.06

Gene sequence:

>861_bases
ATGTATGAATATGAAATTCCAATTAATTTATCTGATATAGTCAAAAATTATGAAGTCATATTATTTGATATATACGGAGT
ATTGCTAGAAAATAACATTCCGTATACTAAAACAATAGAAGTGGTTAATAATCTATCAAAAAGTACAAAAATATGTTTTG
TATCTAATACTCCTCAGCCAGTTCAGCATTCTAGTAATAGACTTAATATTTATGGAATCAACGCCACTCCACAAAATGTT
TATACTTCTGGTGAAATAGCTAGAGAAATATTAAAGAATTCAAGTAAAAATCTTAACATTGATAATCCTATTGTCTTTCA
TTTAGGACCGGACTTTAAAAAAACTGTATTAGAAGATCTACCCATTAAAACTACTGAAAAAATTCATGATGCTAATATAT
TACTTTTAACAGCATTTGAGGATTATGAAGAAAAGTTAGATCAATATAATTCTATATTTCAAACCGCAATAGCTAACAAG
GCAGTATGTCTTTGTGCAAATCCAGATGTTATAAATCCATTTGAAAACAAAAATAGATATTGCGCTGGATATTTTAGTGC
TGTTTATAAATCTATGGGAGGAAAAGTAGTATATAGCGGCAAACCACATTCAGAAATTTTTCAAGCTGTATTAAATACCT
TAGCACTAAATGTCAAAAAAGAAAAAATACTAATGATAGGTGATACTTTAGAAACAGATATTCTTGGAGCAAATAACATA
GGCATAGATTCAGCTCTAGTATTAACAGGAAATGCTTTTAGAATAGCTAAAGCTTCAAATGTTCATGATCAAATTAATAT
ACTTAAAAATGCATTTAAACTAAAAAATATTTATCCCAAATACATAATTAACATTATTTAA

Upstream 100 bases:

>100_bases
TAATGGATAACTTAGTGGAAAAACCTATTATGATAACATATAGTATAATCTTTAAGAAGTCAAAAATACTTAAATTAATA
TTACACAGCGAGAATTTAAA

Downstream 100 bases:

>100_bases
CCAGTTTCAGATAATGGAAATGACAGAGAGCAGAATAAGTAAGTATTTCAACAATAGTTGAACGCTAAAAAATATAAAAA
AGATAAGAATAAAGAAGTAA

Product: HAD superfamily protein involved in N-acetyl-glucosamine catabolism

Products: NA

Alternate protein names: HAD-Superfamily Subfamily IIA Hydrolase; HAD-Superfamily Hydrolase Subfamily IIA; HAD-Superfamily Hydrolase; HAD-Superfamily Subfamily IIA Hydrolase Like Protein; HAD Superfamily Hydrolase; HAD-Superfamily Subfamily IIA Hydrolase TIGR; Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Had-Superfamily Subfamily IIa Hydrolase Like Protein; Sugar Phosphatases Of HAD Superfamily; Haloacid Dehalogenase-Like Family Hydrolase; HAD Superfamily Sugar Phosphatase; Hydrolase Haloacid Dehalogenase-Like Family; Haloacid Dehalogenase Domain Protein Hydrolase; Hydrolase IIA; HAD Family Sugar Phosphatase; Sugar Phosphatase; HAD-Superfamily Subfamily IIA Hydrolase-Like Protein

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MYEYEIPINLSDIVKNYEVILFDIYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQPVQHSSNRLNIYGINATPQNV
YTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDLPIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANK
AVCLCANPDVINPFENKNRYCAGYFSAVYKSMGGKVVYSGKPHSEIFQAVLNTLALNVKKEKILMIGDTLETDILGANNI
GIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII

Sequences:

>Translated_286_residues
MYEYEIPINLSDIVKNYEVILFDIYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQPVQHSSNRLNIYGINATPQNV
YTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDLPIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANK
AVCLCANPDVINPFENKNRYCAGYFSAVYKSMGGKVVYSGKPHSEIFQAVLNTLALNVKKEKILMIGDTLETDILGANNI
GIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII
>Mature_286_residues
MYEYEIPINLSDIVKNYEVILFDIYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQPVQHSSNRLNIYGINATPQNV
YTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDLPIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANK
AVCLCANPDVINPFENKNRYCAGYFSAVYKSMGGKVVYSGKPHSEIFQAVLNTLALNVKKEKILMIGDTLETDILGANNI
GIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32100; Mature: 32100

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEYEIPINLSDIVKNYEVILFDIYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQP
CCEEEECCCHHHHHCCCEEEEEEEEHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCCCC
VQHSSNRLNIYGINATPQNVYTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDL
CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHC
PIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANKAVCLCANPDVINPFENKNRY
CCCCHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE
CAGYFSAVYKSMGGKVVYSGKPHSEIFQAVLNTLALNVKKEKILMIGDTLETDILGANNI
EHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEECCCCC
GIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII
CCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHEECC
>Mature Secondary Structure
MYEYEIPINLSDIVKNYEVILFDIYGVLLENNIPYTKTIEVVNNLSKSTKICFVSNTPQP
CCEEEECCCHHHHHCCCEEEEEEEEHHHHCCCCCCHHHHHHHHCCCCCCEEEEECCCCCC
VQHSSNRLNIYGINATPQNVYTSGEIAREILKNSSKNLNIDNPIVFHLGPDFKKTVLEDL
CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHC
PIKTTEKIHDANILLLTAFEDYEEKLDQYNSIFQTAIANKAVCLCANPDVINPFENKNRY
CCCCHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE
CAGYFSAVYKSMGGKVVYSGKPHSEIFQAVLNTLALNVKKEKILMIGDTLETDILGANNI
EHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEECCCCC
GIDSALVLTGNAFRIAKASNVHDQINILKNAFKLKNIYPKYIINII
CCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA