| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is gltX
Identifier: 189183684
GI number: 189183684
Start: 817767
End: 819113
Strand: Direct
Name: gltX
Synonym: OTT_0777
Alternate gene names: 189183684
Gene position: 817767-819113 (Clockwise)
Preceding gene: 189183683
Following gene: 189183685
Centisome position: 40.71
GC content: 32.29
Gene sequence:
>1347_bases ATGACTGTAATTACTAGATTTGCTCCTTCTCCTACAGGAAAATTACATATTGGCAATGTTAGAGTTGCTTTAGTAAATTG GTTGTATGCCCAAAAGTATAATGGGAATTTTATTTTACGTATTGATGACACTGATCGTGACCGTAGTAAAGTAGAGTACC ATGAAGCTATTATTAAAGATTTGCAGTGGTTAGGAATAAATTGGAATAGCAGCTTTTTACAGTCTACTAGATTCAATAAA TATGCAGCAGCTAAGCAATATTTAATTAGTAGTGGTAGATTATATGAATGTTATGAAACGCCTGAAATGCTAGAAATAGA GCGAAAGAGACAGCTTGCATCTGGGTATCCGCCAATCTATAGCAGAAAATCTCTTGAACTAACAACAGCACAGAAGGTGC AATTGCAAGCTGAAGGATATAAAGTTCATTATCGATTTTTAATTGATCGTAATAAACCAATAATTTGGAATGATTTAATT AAGGGAGAAATCAAATATGATGGTTCAAATGTTAGTGATCCGATAGTTATAAAAGAAGATGGTACCATGATCTATATGTT ATGTTCTGTTATTGATGATATAGAATATCGCATTAGTCATATAATACGTGGCGAAGATCATATTACTAATACAGCTATTC AAATTCAGATGTTTGAAGCATTAGGCGCTGCAATACCTCAATTAGGACATCTAAGTTTAATTAAGTCAGATAGTGGTAAA ATTTCTAAAAGAATAGGTGGCTTTACAATCGATTACCTCAAAGATCAGTTGGGTATTGAACCAATGGCTGTTAATAATTT ATTGGCGTTGTCTGGCACATCAAATAACGTTGATGCATATTTCAGTTTAGAATCACTTATCACTAAGTTTGATCTTAGTG CATTTTCAAAAAGTACAATTATTTATAATGAAAATGAGCTTGTTACGCTAAATCATAAGCTTCTTGTAAACACTGAGTAT GATACCATTAAACATAGGTTAACTGCAATTGGATTACCTGATGTTACTAAAGAATTTTGGTTAGCGGTACGCCATAATCT GAATACATTAAATGATATCAAGATTTGGTGGCAAATATGCTATTTACCTACTTTAGATAAATTTCAGGAGCAGGATGCAG AGTTTTTAAAGCTTGCTGCTGAATTGTTGCCTTCAGGAAAGTTAACTGATAATAGTTGGGATGATTGGGTTCAAAATATT ATTAAAGCAACTAATAGACGTGGTAAAGCATTATTTATGCCTTTAAGATTAGCTCTAACTGGTATAACATATGGCCCTGA ATTAAAATATTTATTACCTTTAATTGGAGGAGATGAAGTTAGAGCAAGACTTCTAAGATATCAATAA
Upstream 100 bases:
>100_bases CAATTCTAAGTTAAATCAGTATAGGTATTGCAATAATGTCATAATCTTGCATAATAAATATCCATTAGCATACTTTTTTG ATAATTTAAATTTAGAAAAA
Downstream 100 bases:
>100_bases ACAAGAAAATTTAACAATTCAGGTACTCATATAATTAAGGACGATAAATATTAGAATATAGTATATGAACTTATATATTT ATAACACCCTTTCTAGGAAA
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase 1; GluRS 1
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MTVITRFAPSPTGKLHIGNVRVALVNWLYAQKYNGNFILRIDDTDRDRSKVEYHEAIIKDLQWLGINWNSSFLQSTRFNK YAAAKQYLISSGRLYECYETPEMLEIERKRQLASGYPPIYSRKSLELTTAQKVQLQAEGYKVHYRFLIDRNKPIIWNDLI KGEIKYDGSNVSDPIVIKEDGTMIYMLCSVIDDIEYRISHIIRGEDHITNTAIQIQMFEALGAAIPQLGHLSLIKSDSGK ISKRIGGFTIDYLKDQLGIEPMAVNNLLALSGTSNNVDAYFSLESLITKFDLSAFSKSTIIYNENELVTLNHKLLVNTEY DTIKHRLTAIGLPDVTKEFWLAVRHNLNTLNDIKIWWQICYLPTLDKFQEQDAEFLKLAAELLPSGKLTDNSWDDWVQNI IKATNRRGKALFMPLRLALTGITYGPELKYLLPLIGGDEVRARLLRYQ
Sequences:
>Translated_448_residues MTVITRFAPSPTGKLHIGNVRVALVNWLYAQKYNGNFILRIDDTDRDRSKVEYHEAIIKDLQWLGINWNSSFLQSTRFNK YAAAKQYLISSGRLYECYETPEMLEIERKRQLASGYPPIYSRKSLELTTAQKVQLQAEGYKVHYRFLIDRNKPIIWNDLI KGEIKYDGSNVSDPIVIKEDGTMIYMLCSVIDDIEYRISHIIRGEDHITNTAIQIQMFEALGAAIPQLGHLSLIKSDSGK ISKRIGGFTIDYLKDQLGIEPMAVNNLLALSGTSNNVDAYFSLESLITKFDLSAFSKSTIIYNENELVTLNHKLLVNTEY DTIKHRLTAIGLPDVTKEFWLAVRHNLNTLNDIKIWWQICYLPTLDKFQEQDAEFLKLAAELLPSGKLTDNSWDDWVQNI IKATNRRGKALFMPLRLALTGITYGPELKYLLPLIGGDEVRARLLRYQ >Mature_447_residues TVITRFAPSPTGKLHIGNVRVALVNWLYAQKYNGNFILRIDDTDRDRSKVEYHEAIIKDLQWLGINWNSSFLQSTRFNKY AAAKQYLISSGRLYECYETPEMLEIERKRQLASGYPPIYSRKSLELTTAQKVQLQAEGYKVHYRFLIDRNKPIIWNDLIK GEIKYDGSNVSDPIVIKEDGTMIYMLCSVIDDIEYRISHIIRGEDHITNTAIQIQMFEALGAAIPQLGHLSLIKSDSGKI SKRIGGFTIDYLKDQLGIEPMAVNNLLALSGTSNNVDAYFSLESLITKFDLSAFSKSTIIYNENELVTLNHKLLVNTEYD TIKHRLTAIGLPDVTKEFWLAVRHNLNTLNDIKIWWQICYLPTLDKFQEQDAEFLKLAAELLPSGKLTDNSWDDWVQNII KATNRRGKALFMPLRLALTGITYGPELKYLLPLIGGDEVRARLLRYQ
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=485, Percent_Identity=28.0412371134021, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI62241042, Length=246, Percent_Identity=24.7967479674797, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1788743, Length=468, Percent_Identity=33.5470085470085, Blast_Score=230, Evalue=1e-61, Organism=Escherichia coli, GI226510925, Length=257, Percent_Identity=29.1828793774319, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1786895, Length=170, Percent_Identity=34.1176470588235, Blast_Score=84, Evalue=3e-17, Organism=Caenorhabditis elegans, GI71993394, Length=342, Percent_Identity=33.6257309941521, Blast_Score=183, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6324540, Length=486, Percent_Identity=29.0123456790123, Blast_Score=157, Evalue=3e-39, Organism=Saccharomyces cerevisiae, GI6321192, Length=148, Percent_Identity=35.1351351351351, Blast_Score=87, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6324742, Length=136, Percent_Identity=35.2941176470588, Blast_Score=78, Evalue=2e-15, Organism=Drosophila melanogaster, GI24665321, Length=484, Percent_Identity=28.9256198347107, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI24649466, Length=211, Percent_Identity=28.436018957346, Blast_Score=76, Evalue=6e-14,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE1_ORITI (B3CRX8)
Other databases:
- EMBL: AP008981 - RefSeq: YP_001937469.1 - GeneID: 6337915 - GenomeReviews: AP008981_GR - KEGG: ott:OTT_0777 - HOGENOM: HBG628189 - OMA: RSKQEYI - ProtClustDB: PRK12558 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 51380; Mature: 51249
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 243-243
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVITRFAPSPTGKLHIGNVRVALVNWLYAQKYNGNFILRIDDTDRDRSKVEYHEAIIKD CCEEEECCCCCCCEEEECCEEEEEHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHH LQWLGINWNSSFLQSTRFNKYAAAKQYLISSGRLYECYETPEMLEIERKRQLASGYPPIY HHEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC SRKSLELTTAQKVQLQAEGYKVHYRFLIDRNKPIIWNDLIKGEIKYDGSNVSDPIVIKED CCCCEEEEEEEEEEEEECCEEEEEEEEEECCCCEEEECCCCCEEEECCCCCCCCEEEECC GTMIYMLCSVIDDIEYRISHIIRGEDHITNTAIQIQMFEALGAAIPQLGHLSLIKSDSGK CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHCCCCCCEEEEECCCCH ISKRIGGFTIDYLKDQLGIEPMAVNNLLALSGTSNNVDAYFSLESLITKFDLSAFSKSTI HHHHHCCEEHHHHHHHHCCCCEEECCEEEEECCCCCCEEEEEHHHHHHHHHHHHCCCEEE IYNENELVTLNHKLLVNTEYDTIKHRLTAIGLPDVTKEFWLAVRHNLNTLNDIKIWWQIC EECCCCEEEEEEEEEEECCHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCHHHEEEEEEE YLPTLDKFQEQDAEFLKLAAELLPSGKLTDNSWDDWVQNIIKATNRRGKALFMPLRLALT ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEHHHC GITYGPELKYLLPLIGGDEVRARLLRYQ CCCCCCCCCEEEEECCCHHHHHHHHCCC >Mature Secondary Structure TVITRFAPSPTGKLHIGNVRVALVNWLYAQKYNGNFILRIDDTDRDRSKVEYHEAIIKD CEEEECCCCCCCEEEECCEEEEEHHHHHHEEECCEEEEEECCCCCCHHHHHHHHHHHHH LQWLGINWNSSFLQSTRFNKYAAAKQYLISSGRLYECYETPEMLEIERKRQLASGYPPIY HHEEECCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC SRKSLELTTAQKVQLQAEGYKVHYRFLIDRNKPIIWNDLIKGEIKYDGSNVSDPIVIKED CCCCEEEEEEEEEEEEECCEEEEEEEEEECCCCEEEECCCCCEEEECCCCCCCCEEEECC GTMIYMLCSVIDDIEYRISHIIRGEDHITNTAIQIQMFEALGAAIPQLGHLSLIKSDSGK CCEEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHCCCCCCEEEEECCCCH ISKRIGGFTIDYLKDQLGIEPMAVNNLLALSGTSNNVDAYFSLESLITKFDLSAFSKSTI HHHHHCCEEHHHHHHHHCCCCEEECCEEEEECCCCCCEEEEEHHHHHHHHHHHHCCCEEE IYNENELVTLNHKLLVNTEYDTIKHRLTAIGLPDVTKEFWLAVRHNLNTLNDIKIWWQIC EECCCCEEEEEEEEEEECCHHHHHHHHHEECCCCHHHHHHHHHHHCCCCCHHHEEEEEEE YLPTLDKFQEQDAEFLKLAAELLPSGKLTDNSWDDWVQNIIKATNRRGKALFMPLRLALT ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEHHHC GITYGPELKYLLPLIGGDEVRARLLRYQ CCCCCCCCCEEEEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA