| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183433
Identifier: 189183433
GI number: 189183433
Start: 548653
End: 549834
Strand: Reverse
Name: 189183433
Synonym: OTT_0526
Alternate gene names: NA
Gene position: 549834-548653 (Counterclockwise)
Preceding gene: 189183434
Following gene: 189183432
Centisome position: 27.37
GC content: 38.32
Gene sequence:
>1182_bases ATGCTCAGATACGCCCATAAAATGCCGCCTGAATTCCAGAACTCATTTATAGATGCCTTGCAAAGAAATGGTATCAAATT GCCTCCCGATTGGCACAGTACCATACATTTGTTGAATTTATCATCGTTGCTTGACCTTCTTAAGCGATCAGACCCTAAAG ACCATCCGCATCGATGCGCTGATATTCGCGAACTTATAAATCATATCTTATCAGAGTTAAATAACATGCAAAAAATAGAT CGTGTTGAAATTAAACCTTATGACCCAAATTGGCCTCATATTTTTGAAAAAGAGGCACCACTTATCCGTCAAGCATTGAG GGATAACTGCATTGCTATTTATCATGTCGGCTCGACGTCTGTTCCAGGCTTGGCCGCTAAGCCTAAGATAGATATTATCG CAGTTGTACGAAATTTGTTTTTTGATAAATTACAATTGGAGGCTGTGGGGTATAAATATAGGGGTGGGTTTAATATCCCT CTGCGCAGAAGCTTCACAATAAGAACGGCTGATAAAAACATCAATCTTCACGTTTTTGAAGAAAACGATCCTGAAATTGA ATTAAATATTTTATTTAGGGATCATTTGCGGGAGAACCCTAGTGCTCGGGATGAATATGCATTGCTTAAATACAAGCTGA TTGCAGAAGAATCTTCCCACCAGAAAAACAACTCTATTTACAAAGGATATACTTTGGGTAAGCATGACTTTATCCAAAAT ATCTTAAAAAAGTCTGGCTTCAATAAATACCGATTTGTGCTATGCACTCACACTTTAGAATGGGCTACAGCCAAACATTT CCGCGACACTTATTTCTTTGGTCCACACGGCATAGAAGATCCTTATACATGGACATTTAACCATGAAGAGCATGCTCATC TTGTTTTATATCAAGGCACAGAGATTGTTGCTTACGCCCATATTCAGTTTTGGCCAAATCAAAGAGCGGCAATTCTTATT ATTGCCACTGATGAGAATAAGCGAAATCAAAATTCTGGCAGTCAATTTTTGGCTTTAATCGAGAAGTGGTTGAAAAGTTT AGGAGTTAAAAGCCTTCATGCTGAATCTAGACAAAGCAGTTTAAGATTCTATCTCAAAAACGGCTATACAGAAGTGCCGT TTAATGATCCCGAAAACCATGAATCCGATCCAAATGATGTTCCAGTGGGCAAGGTTTTATGA
Upstream 100 bases:
>100_bases TAATATTTTGGTAGATAAAATTAACGGCTCTTGGGTTGTGACCTGCATTTTGGACTGGGAATTTGCTTTTTCTAGGTCTT GCCTTTGGAATGTGGCTAAC
Downstream 100 bases:
>100_bases TAAAGATTGAAACAATTACATTAGACCTAGCTGAAGTACTCTGCCGCAAAATTACAGTTGATTTACCGGAGTACTTTGGT TTTGCCCCAAGTGAACGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MLRYAHKMPPEFQNSFIDALQRNGIKLPPDWHSTIHLLNLSSLLDLLKRSDPKDHPHRCADIRELINHILSELNNMQKID RVEIKPYDPNWPHIFEKEAPLIRQALRDNCIAIYHVGSTSVPGLAAKPKIDIIAVVRNLFFDKLQLEAVGYKYRGGFNIP LRRSFTIRTADKNINLHVFEENDPEIELNILFRDHLRENPSARDEYALLKYKLIAEESSHQKNNSIYKGYTLGKHDFIQN ILKKSGFNKYRFVLCTHTLEWATAKHFRDTYFFGPHGIEDPYTWTFNHEEHAHLVLYQGTEIVAYAHIQFWPNQRAAILI IATDENKRNQNSGSQFLALIEKWLKSLGVKSLHAESRQSSLRFYLKNGYTEVPFNDPENHESDPNDVPVGKVL
Sequences:
>Translated_393_residues MLRYAHKMPPEFQNSFIDALQRNGIKLPPDWHSTIHLLNLSSLLDLLKRSDPKDHPHRCADIRELINHILSELNNMQKID RVEIKPYDPNWPHIFEKEAPLIRQALRDNCIAIYHVGSTSVPGLAAKPKIDIIAVVRNLFFDKLQLEAVGYKYRGGFNIP LRRSFTIRTADKNINLHVFEENDPEIELNILFRDHLRENPSARDEYALLKYKLIAEESSHQKNNSIYKGYTLGKHDFIQN ILKKSGFNKYRFVLCTHTLEWATAKHFRDTYFFGPHGIEDPYTWTFNHEEHAHLVLYQGTEIVAYAHIQFWPNQRAAILI IATDENKRNQNSGSQFLALIEKWLKSLGVKSLHAESRQSSLRFYLKNGYTEVPFNDPENHESDPNDVPVGKVL >Mature_393_residues MLRYAHKMPPEFQNSFIDALQRNGIKLPPDWHSTIHLLNLSSLLDLLKRSDPKDHPHRCADIRELINHILSELNNMQKID RVEIKPYDPNWPHIFEKEAPLIRQALRDNCIAIYHVGSTSVPGLAAKPKIDIIAVVRNLFFDKLQLEAVGYKYRGGFNIP LRRSFTIRTADKNINLHVFEENDPEIELNILFRDHLRENPSARDEYALLKYKLIAEESSHQKNNSIYKGYTLGKHDFIQN ILKKSGFNKYRFVLCTHTLEWATAKHFRDTYFFGPHGIEDPYTWTFNHEEHAHLVLYQGTEIVAYAHIQFWPNQRAAILI IATDENKRNQNSGSQFLALIEKWLKSLGVKSLHAESRQSSLRFYLKNGYTEVPFNDPENHESDPNDVPVGKVL
Specific function: Unknown
COG id: COG2320
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0157 (GrpB) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007344 [H]
Pfam domain/function: PF04229 UPF0157 [H]
EC number: NA
Molecular weight: Translated: 45754; Mature: 45754
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRYAHKMPPEFQNSFIDALQRNGIKLPPDWHSTIHLLNLSSLLDLLKRSDPKDHPHRCA CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHEEEEEHHHHHHHHHCCCCCCCCHHHH DIRELINHILSELNNMQKIDRVEIKPYDPNWPHIFEKEAPLIRQALRDNCIAIYHVGSTS HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC VPGLAAKPKIDIIAVVRNLFFDKLQLEAVGYKYRGGFNIPLRRSFTIRTADKNINLHVFE CCCCCCCCCHHHHHHHHHHHHHHHEEEEECEEECCCCCCCCCCEEEEEECCCCCEEEEEE ENDPEIELNILFRDHLRENPSARDEYALLKYKLIAEESSHQKNNSIYKGYTLGKHDFIQN CCCCCEEEEEEEEHHHCCCCCCCCCHHHEEEEEECCCCCCCCCCCEEECEECCHHHHHHH ILKKSGFNKYRFVLCTHTLEWATAKHFRDTYFFGPHGIEDPYTWTFNHEEHAHLVLYQGT HHHHCCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCCEEEEEEECC EIVAYAHIQFWPNQRAAILIIATDENKRNQNSGSQFLALIEKWLKSLGVKSLHAESRQSS EEEEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH LRFYLKNGYTEVPFNDPENHESDPNDVPVGKVL HEEEEECCEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLRYAHKMPPEFQNSFIDALQRNGIKLPPDWHSTIHLLNLSSLLDLLKRSDPKDHPHRCA CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHEEEEEHHHHHHHHHCCCCCCCCHHHH DIRELINHILSELNNMQKIDRVEIKPYDPNWPHIFEKEAPLIRQALRDNCIAIYHVGSTS HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCC VPGLAAKPKIDIIAVVRNLFFDKLQLEAVGYKYRGGFNIPLRRSFTIRTADKNINLHVFE CCCCCCCCCHHHHHHHHHHHHHHHEEEEECEEECCCCCCCCCCEEEEEECCCCCEEEEEE ENDPEIELNILFRDHLRENPSARDEYALLKYKLIAEESSHQKNNSIYKGYTLGKHDFIQN CCCCCEEEEEEEEHHHCCCCCCCCCHHHEEEEEECCCCCCCCCCCEEECEECCHHHHHHH ILKKSGFNKYRFVLCTHTLEWATAKHFRDTYFFGPHGIEDPYTWTFNHEEHAHLVLYQGT HHHHCCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCCCEEEEECCCCCEEEEEEECC EIVAYAHIQFWPNQRAAILIIATDENKRNQNSGSQFLALIEKWLKSLGVKSLHAESRQSS EEEEEEEEEECCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH LRFYLKNGYTEVPFNDPENHESDPNDVPVGKVL HEEEEECCEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]