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The map label for this gene is sca3 [H]

Identifier: 189183367

GI number: 189183367

Start: 484504

End: 486066

Strand: Reverse

Name: sca3 [H]

Synonym: OTT_0460

Alternate gene names: 189183367

Gene position: 486066-484504 (Counterclockwise)

Preceding gene: 189183369

Following gene: 189183366

Centisome position: 24.19

GC content: 29.62

Gene sequence:

>1563_bases
ATGCGCCAATCTAATTTATCATTTCAAATATTTATGCATCACTTAGTAAAGGCATTACTGATTTTTTTAATAACAGTATT
CACAATATGTATAGCTAAAAGTATAACTCCAGAGAAGGGAAAATATCCTCAGGCAGAGGATATACATAAAGAAGATGAAG
AAGATGAAGAAGAGATTGCAGATAATGGTCTATTAGATGCTGTCAGTAATATGAATTTGGACATATCTGGTATAGGAAAG
GCAAGAGAAGGATTAAGAAAAGATATAACAGAAATATCTAAGTTACTCTACATGTTAGAGCAAAGCACTGCTTCTTCTAA
GAATTTAACAATGAGGTTACAACAGGCTAATACAAGAGAAAACGAGCAAAGTAACTATACAGGATTGCTAATAACAGAAA
TAGAATCCATAAATAAAGAAAATGATTATCTGCAACAAAAAAATAACCAACTAAAAATAAAATTACAGCAACTAGAAGTA
AAAGTAGAGCAAGCACTAGCAAGAAATACTGATTTACGACAAATTTTACTAAAACCGCAAGCTGAAATGGATAATCTACG
GAAACAAAATGAACAACTAAAGATGCAGCTACAGCAGCTACAACTAAAGTTACAGAACTTAATTTCTTTGCAAGACAAAG
ACAGCAACTTAGCACCAATAAATGGCATTAAATTAAACTATATCAATGATGTTAAGTGTATTGCTTTAGCTAATACTGTT
ATTGTTAAGGCTTTAGCTTGTACTTTTACAGATAAATTGTCTAAAAGCAATAGGATAAAAAACCATTGTCATATTACCAG
TTCTGGCTCAAATATTGATAAGTACTGGAATGTTTGGGCTGAACCTTCCTTTATTAATACTTATCAACAAGAATATGGAA
AAATTCAGAAACATAGCTCTATTGTTAATGGTATACTTGTTGGAGTCAATAAATATTTAAACGATAGAATTGCTATCGGC
ATTATTGCATCATATTTAAAGCTTGATGCGCAGTATGCTAGCAATATATTAAAGAAAACAAAATGTAGAGTATACTCGCT
ATATTTAGGCAGTAGATATTATTTTCAGAAAAATATATTTACACAGGGAATAATAGGGTTTGCTAATTATGATGGCAAAA
ACAAATACCAACATATATATAAACAACCTTCTGCTAAGATTGATAATATAAGTTATTATGGCAATCTCATGATAGGGTAC
CATTTTACAAATCAACGACAGCTAAATTTAGAACCGTCGATTGGTATCAGTTGCATTTATTTTGATATGAAAAGTTATAA
GCCATCTAACGATAAAATTCTAGAAAGTATAATTGGGGCTACTATAAAATATCCGATTATTTATAATATCAGTAATGCTA
CTGAGATAGTGACTGAGCTTTCTGGATTCATTAATTATAACATATTAGATAATTATGATTACATGTATAAAACTTATTAT
CAACTGGGAGCTAAAATAAATATTAACTATGATATGATAAGGTTAGCTATTTCATATAATGTTTACTTAACAGAGAAACA
TATTGCTCATGCTGGAACGATACATATAGGAACTAATTTTTAG

Upstream 100 bases:

>100_bases
GCTTTTTAATTAACATATTATGTGGGTTAAATTAAAATATTTGAATGAATTATAAATGCAAAATAATTAATAATTATATA
TTTAGCATCTGATAGTAATT

Downstream 100 bases:

>100_bases
GTATCGCACTATAGCAATTAATTTTTGACTATTCAGCGTAACTACATAGTGACGCATCACAATATGAAATAGCTAAACGC
CTAGGACTAAGTAAGTCTGA

Product: cell surface antigen

Products: NA

Alternate protein names: 190 kDa antigen; Cell surface antigen; rOmp A; rOmpA; 120 kDa outer membrane protein OmpA [H]

Number of amino acids: Translated: 520; Mature: 520

Protein sequence:

>520_residues
MRQSNLSFQIFMHHLVKALLIFLITVFTICIAKSITPEKGKYPQAEDIHKEDEEDEEEIADNGLLDAVSNMNLDISGIGK
AREGLRKDITEISKLLYMLEQSTASSKNLTMRLQQANTRENEQSNYTGLLITEIESINKENDYLQQKNNQLKIKLQQLEV
KVEQALARNTDLRQILLKPQAEMDNLRKQNEQLKMQLQQLQLKLQNLISLQDKDSNLAPINGIKLNYINDVKCIALANTV
IVKALACTFTDKLSKSNRIKNHCHITSSGSNIDKYWNVWAEPSFINTYQQEYGKIQKHSSIVNGILVGVNKYLNDRIAIG
IIASYLKLDAQYASNILKKTKCRVYSLYLGSRYYFQKNIFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGY
HFTNQRQLNLEPSIGISCIYFDMKSYKPSNDKILESIIGATIKYPIIYNISNATEIVTELSGFINYNILDNYDYMYKTYY
QLGAKININYDMIRLAISYNVYLTEKHIAHAGTIHIGTNF

Sequences:

>Translated_520_residues
MRQSNLSFQIFMHHLVKALLIFLITVFTICIAKSITPEKGKYPQAEDIHKEDEEDEEEIADNGLLDAVSNMNLDISGIGK
AREGLRKDITEISKLLYMLEQSTASSKNLTMRLQQANTRENEQSNYTGLLITEIESINKENDYLQQKNNQLKIKLQQLEV
KVEQALARNTDLRQILLKPQAEMDNLRKQNEQLKMQLQQLQLKLQNLISLQDKDSNLAPINGIKLNYINDVKCIALANTV
IVKALACTFTDKLSKSNRIKNHCHITSSGSNIDKYWNVWAEPSFINTYQQEYGKIQKHSSIVNGILVGVNKYLNDRIAIG
IIASYLKLDAQYASNILKKTKCRVYSLYLGSRYYFQKNIFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGY
HFTNQRQLNLEPSIGISCIYFDMKSYKPSNDKILESIIGATIKYPIIYNISNATEIVTELSGFINYNILDNYDYMYKTYY
QLGAKININYDMIRLAISYNVYLTEKHIAHAGTIHIGTNF
>Mature_520_residues
MRQSNLSFQIFMHHLVKALLIFLITVFTICIAKSITPEKGKYPQAEDIHKEDEEDEEEIADNGLLDAVSNMNLDISGIGK
AREGLRKDITEISKLLYMLEQSTASSKNLTMRLQQANTRENEQSNYTGLLITEIESINKENDYLQQKNNQLKIKLQQLEV
KVEQALARNTDLRQILLKPQAEMDNLRKQNEQLKMQLQQLQLKLQNLISLQDKDSNLAPINGIKLNYINDVKCIALANTV
IVKALACTFTDKLSKSNRIKNHCHITSSGSNIDKYWNVWAEPSFINTYQQEYGKIQKHSSIVNGILVGVNKYLNDRIAIG
IIASYLKLDAQYASNILKKTKCRVYSLYLGSRYYFQKNIFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGY
HFTNQRQLNLEPSIGISCIYFDMKSYKPSNDKILESIIGATIKYPIIYNISNATEIVTELSGFINYNILDNYDYMYKTYY
QLGAKININYDMIRLAISYNVYLTEKHIAHAGTIHIGTNF

Specific function: Elicits protective immunity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: 32 kDa beta peptide:Cell outer membrane; Multi-pass membrane protein (Potential). Note=The cleaved C- terminal fragment (autotransporter domain) is localized in the outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315 [H]

Pfam domain/function: PF03797 Autotransporter [H]

EC number: NA

Molecular weight: Translated: 59725; Mature: 59725

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSNLSFQIFMHHLVKALLIFLITVFTICIAKSITPEKGKYPQAEDIHKEDEEDEEEIA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHH
DNGLLDAVSNMNLDISGIGKAREGLRKDITEISKLLYMLEQSTASSKNLTMRLQQANTRE
CCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
NEQSNYTGLLITEIESINKENDYLQQKNNQLKIKLQQLEVKVEQALARNTDLRQILLKPQ
CCCCCCCEEEEEEHHHCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHCCC
AEMDNLRKQNEQLKMQLQQLQLKLQNLISLQDKDSNLAPINGIKLNYINDVKCIALANTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEHHHHHHHH
IVKALACTFTDKLSKSNRIKNHCHITSSGSNIDKYWNVWAEPSFINTYQQEYGKIQKHSS
HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IVNGILVGVNKYLNDRIAIGIIASYLKLDAQYASNILKKTKCRVYSLYLGSRYYFQKNIF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECCCH
TQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGYHFTNQRQLNLEPSIGISCIY
HHCCEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCCCEEEEE
FDMKSYKPSNDKILESIIGATIKYPIIYNISNATEIVTELSGFINYNILDNYDYMYKTYY
EECCCCCCCCHHHHHHHHCCEEECCEEEECCCHHHHHHHHHHHEEEEEECCCHHHHHHHH
QLGAKININYDMIRLAISYNVYLTEKHIAHAGTIHIGTNF
HCCCEEECCCEEEEEEEEEEEEEEECHHCCCCEEEECCCC
>Mature Secondary Structure
MRQSNLSFQIFMHHLVKALLIFLITVFTICIAKSITPEKGKYPQAEDIHKEDEEDEEEIA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHH
DNGLLDAVSNMNLDISGIGKAREGLRKDITEISKLLYMLEQSTASSKNLTMRLQQANTRE
CCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
NEQSNYTGLLITEIESINKENDYLQQKNNQLKIKLQQLEVKVEQALARNTDLRQILLKPQ
CCCCCCCEEEEEEHHHCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHCCC
AEMDNLRKQNEQLKMQLQQLQLKLQNLISLQDKDSNLAPINGIKLNYINDVKCIALANTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEHHHHHHHH
IVKALACTFTDKLSKSNRIKNHCHITSSGSNIDKYWNVWAEPSFINTYQQEYGKIQKHSS
HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IVNGILVGVNKYLNDRIAIGIIASYLKLDAQYASNILKKTKCRVYSLYLGSRYYFQKNIF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECCCH
TQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGYHFTNQRQLNLEPSIGISCIY
HHCCEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCCCCEEEEE
FDMKSYKPSNDKILESIIGATIKYPIIYNISNATEIVTELSGFINYNILDNYDYMYKTYY
EECCCCCCCCHHHHHHHHCCEEECCEEEECCCHHHHHHHHHHHEEEEEECCCHHHHHHHH
QLGAKININYDMIRLAISYNVYLTEKHIAHAGTIHIGTNF
HCCCEEECCCEEEEEEEEEEEEEEECHHCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8125327; 11557893; 8862558 [H]