| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183365
Identifier: 189183365
GI number: 189183365
Start: 480607
End: 481689
Strand: Reverse
Name: 189183365
Synonym: OTT_0458
Alternate gene names: NA
Gene position: 481689-480607 (Counterclockwise)
Preceding gene: 189183366
Following gene: 189183362
Centisome position: 23.98
GC content: 29.82
Gene sequence:
>1083_bases ATGTTTAAGTGTCAAGATAGTACTATAACTCTAATTAAAGCAGTAACGGAAGCAGTTCATAATATATCTGTTGCATTTAA TAATATATATAGCAAAATTATATATAGTGAAGTTGTTACAGCAGATAGTTGTAATACTTCTCATGATAATGATTATGATT GCGCAATTATTGATAGAATTGACAATGTGAATTATGTAGTTAGACCAGGGATACCAAATAATTTTACATCAGTTTTATCA CGACTCATGCATTATTTTCAGGAGCCATATAAAATTCATAGATTTTGTTCTTCATCTATAAAATTAGTTTCTGGTAGTAT TGATCCTGCCATTAATTATAGTAATACTACACTTTTATATGATGCTACAAACTGCATTAATAGCAATTTTCTTCAACAAG ACTTAGATAATCCTGAAGCATATCTTAGGTTGAACAATAGCTTTTGCTTTGGTAAGCCAGTAGGAATCGTTAGCCATGTT TTTGCTGGTAGCGATAGCTATGTTAAAAAAAATCTAACCGAATTAGAAAGGCAACTATATTCAGGACCTCGAATTATGGC AATGCTTGATTGCGATGATAACACTTTAACTTCCAGGCTTATTGATACTTGTAAGGAATATATAACAATAGCAAAAGGCT GTACTGTAAAAAGTATAATAGATGCAATTAATGAAAAGTTTTATCAAGACAATTTAGTTCAATGTTATAATTATCAAAAT TCAACATATACTAAATATACTAAAACAGAAGAAGCAGAAGTAGGGAATAATAGTGGTGATGAAAATACTTCGATGTTGTC ATCACTACCTACAATTCCATTACATTATTACATAGTATGTGGAATATGTGTAGTAGTTGGTGGTATTTATATTAATTATT ATTTAAAAAAAACACAGTGTAATATAGAAAAACAATCTGTACACTCGCAAAGCGATGCTAATAATTGCGATGATACAGAA TTACAAAATCTAAGTGAAGGGATATATGCAGAGATAATAGAATACGAAGATCTAAAAGTAGTTTCTGCTGGAGCTCAACA AGATGACTCTACAGCATCTAGCTTTTTTTACAACATATTGTAG
Upstream 100 bases:
>100_bases ACTTAATTTCTTTATACATTCATTTATATATAAATTATGTGTTGATAATTGTAACTGAATGGTATAGCATTTTACATAGA CATATTTTTGGAGGGTGTTT
Downstream 100 bases:
>100_bases AATGTGCTGTGTATGTGAAGTTGTAGATCACCCATACCATAAAGAGTTATGTTTAAAGTAATATTAATATACCTTGTGGA GTAGCAGTTGTTGTTTTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 360; Mature: 360
Protein sequence:
>360_residues MFKCQDSTITLIKAVTEAVHNISVAFNNIYSKIIYSEVVTADSCNTSHDNDYDCAIIDRIDNVNYVVRPGIPNNFTSVLS RLMHYFQEPYKIHRFCSSSIKLVSGSIDPAINYSNTTLLYDATNCINSNFLQQDLDNPEAYLRLNNSFCFGKPVGIVSHV FAGSDSYVKKNLTELERQLYSGPRIMAMLDCDDNTLTSRLIDTCKEYITIAKGCTVKSIIDAINEKFYQDNLVQCYNYQN STYTKYTKTEEAEVGNNSGDENTSMLSSLPTIPLHYYIVCGICVVVGGIYINYYLKKTQCNIEKQSVHSQSDANNCDDTE LQNLSEGIYAEIIEYEDLKVVSAGAQQDDSTASSFFYNIL
Sequences:
>Translated_360_residues MFKCQDSTITLIKAVTEAVHNISVAFNNIYSKIIYSEVVTADSCNTSHDNDYDCAIIDRIDNVNYVVRPGIPNNFTSVLS RLMHYFQEPYKIHRFCSSSIKLVSGSIDPAINYSNTTLLYDATNCINSNFLQQDLDNPEAYLRLNNSFCFGKPVGIVSHV FAGSDSYVKKNLTELERQLYSGPRIMAMLDCDDNTLTSRLIDTCKEYITIAKGCTVKSIIDAINEKFYQDNLVQCYNYQN STYTKYTKTEEAEVGNNSGDENTSMLSSLPTIPLHYYIVCGICVVVGGIYINYYLKKTQCNIEKQSVHSQSDANNCDDTE LQNLSEGIYAEIIEYEDLKVVSAGAQQDDSTASSFFYNIL >Mature_360_residues MFKCQDSTITLIKAVTEAVHNISVAFNNIYSKIIYSEVVTADSCNTSHDNDYDCAIIDRIDNVNYVVRPGIPNNFTSVLS RLMHYFQEPYKIHRFCSSSIKLVSGSIDPAINYSNTTLLYDATNCINSNFLQQDLDNPEAYLRLNNSFCFGKPVGIVSHV FAGSDSYVKKNLTELERQLYSGPRIMAMLDCDDNTLTSRLIDTCKEYITIAKGCTVKSIIDAINEKFYQDNLVQCYNYQN STYTKYTKTEEAEVGNNSGDENTSMLSSLPTIPLHYYIVCGICVVVGGIYINYYLKKTQCNIEKQSVHSQSDANNCDDTE LQNLSEGIYAEIIEYEDLKVVSAGAQQDDSTASSFFYNIL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40496; Mature: 40496
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKCQDSTITLIKAVTEAVHNISVAFNNIYSKIIYSEVVTADSCNTSHDNDYDCAIIDRI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC DNVNYVVRPGIPNNFTSVLSRLMHYFQEPYKIHRFCSSSIKLVSGSIDPAINYSNTTLLY CCCCEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEE DATNCINSNFLQQDLDNPEAYLRLNNSFCFGKPVGIVSHVFAGSDSYVKKNLTELERQLY ECHHHHCHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH SGPRIMAMLDCDDNTLTSRLIDTCKEYITIAKGCTVKSIIDAINEKFYQDNLVQCYNYQN CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEEECCCC STYTKYTKTEEAEVGNNSGDENTSMLSSLPTIPLHYYIVCGICVVVGGIYINYYLKKTQC CCEEEECCCCHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHC NIEKQSVHSQSDANNCDDTELQNLSEGIYAEIIEYEDLKVVSAGAQQDDSTASSFFYNIL CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCC >Mature Secondary Structure MFKCQDSTITLIKAVTEAVHNISVAFNNIYSKIIYSEVVTADSCNTSHDNDYDCAIIDRI CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC DNVNYVVRPGIPNNFTSVLSRLMHYFQEPYKIHRFCSSSIKLVSGSIDPAINYSNTTLLY CCCCEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEE DATNCINSNFLQQDLDNPEAYLRLNNSFCFGKPVGIVSHVFAGSDSYVKKNLTELERQLY ECHHHHCHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH SGPRIMAMLDCDDNTLTSRLIDTCKEYITIAKGCTVKSIIDAINEKFYQDNLVQCYNYQN CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHEEECCCC STYTKYTKTEEAEVGNNSGDENTSMLSSLPTIPLHYYIVCGICVVVGGIYINYYLKKTQC CCEEEECCCCHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHC NIEKQSVHSQSDANNCDDTELQNLSEGIYAEIIEYEDLKVVSAGAQQDDSTASSFFYNIL CCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA