| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183325
Identifier: 189183325
GI number: 189183325
Start: 437751
End: 438170
Strand: Reverse
Name: 189183325
Synonym: OTT_0418
Alternate gene names: NA
Gene position: 438170-437751 (Counterclockwise)
Preceding gene: 189183326
Following gene: 189183324
Centisome position: 21.81
GC content: 30.71
Gene sequence:
>420_bases ATGAATCATCTCTTTAAGCAAAATGCTATACAAGAGCTGGTTAAATATAATAAATGCTTACTTTCAGTAACTATATTGCT GGCTGCAGCTAATATAATTGCGATAATGGCTGCAATTAACAAAGAAGAAAAGTGGTTATTAATTCCAGCAATGGAGCCTG ATCGTAAAATGATGGTTTCATCAAAAAATTACCATGAAACCTATTTAAAGGAATGGGCAATTTATGTGACGAAACTCTTA TTTACTACTTCTCCAAATGAGGTAGAAAGACAAATAGCAGACATGAAAGTTGCATCTAGTAATACTGAATCTTTAAATAA ATTTTTTCATGATCATTTGCAATTTGTTAAAGGCTCAAATGTATCTTCAGTCTTTTTTCCGAAGAAGGTTGAAGTAATAA ATGAATGGAGTATTAATTAG
Upstream 100 bases:
>100_bases TATCGGAGAATTTTTTGCTAAAAAGTTTTTTAGTAGCTAAAGGTTTATTGCTAGCTCCATTAGGATATTCAAGATTGCTG GGCAAAAAAGTTGGCAAATA
Downstream 100 bases:
>100_bases TGGAACGCTTCGTTATTGGTTTAGCGATAGTAAACATATAGCTGTCGATAAGACTTACCTTTTGACTTACAAGCGAACTC CTAATTGCCTTTTATTGTTG
Product: putative conjugative transfer protein TraE
Products: NA
Alternate protein names: Conjugative Transfer Protein
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MNHLFKQNAIQELVKYNKCLLSVTILLAAANIIAIMAAINKEEKWLLIPAMEPDRKMMVSSKNYHETYLKEWAIYVTKLL FTTSPNEVERQIADMKVASSNTESLNKFFHDHLQFVKGSNVSSVFFPKKVEVINEWSIN
Sequences:
>Translated_139_residues MNHLFKQNAIQELVKYNKCLLSVTILLAAANIIAIMAAINKEEKWLLIPAMEPDRKMMVSSKNYHETYLKEWAIYVTKLL FTTSPNEVERQIADMKVASSNTESLNKFFHDHLQFVKGSNVSSVFFPKKVEVINEWSIN >Mature_139_residues MNHLFKQNAIQELVKYNKCLLSVTILLAAANIIAIMAAINKEEKWLLIPAMEPDRKMMVSSKNYHETYLKEWAIYVTKLL FTTSPNEVERQIADMKVASSNTESLNKFFHDHLQFVKGSNVSSVFFPKKVEVINEWSIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16051; Mature: 16051
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHLFKQNAIQELVKYNKCLLSVTILLAAANIIAIMAAINKEEKWLLIPAMEPDRKMMVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHC SKNYHETYLKEWAIYVTKLLFTTSPNEVERQIADMKVASSNTESLNKFFHDHLQFVKGSN CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC VSSVFFPKKVEVINEWSIN CCEEECCHHHHHHHCCCCC >Mature Secondary Structure MNHLFKQNAIQELVKYNKCLLSVTILLAAANIIAIMAAINKEEKWLLIPAMEPDRKMMVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHC SKNYHETYLKEWAIYVTKLLFTTSPNEVERQIADMKVASSNTESLNKFFHDHLQFVKGSN CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC VSSVFFPKKVEVINEWSIN CCEEECCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA