Click here to switch to the map view.

The map label for this gene is 189183276

Identifier: 189183276

GI number: 189183276

Start: 375709

End: 377505

Strand: Reverse

Name: 189183276

Synonym: OTT_0369

Alternate gene names: NA

Gene position: 377505-375709 (Counterclockwise)

Preceding gene: 189183277

Following gene: 189183275

Centisome position: 18.79

GC content: 31.72

Gene sequence:

>1797_bases
ATGTTCTTAACAAAAAAATTATTACTACCTATTTTTAGTTCAATAAACTCAATATCTATAATGTCAAATAATCTAGATCA
AAGTAATAATGAATCAATAAATTCATTAATTCCAACAGATAAATTAGTGTTTATTCCAATTGGTGGATGCAACGAAATAG
GTATGAATGTCAATATCTATCATTACCAAGGAGAATTTATAATGGTAGATTGTGGTGCAGGCTTTCCTAGTGATTTTACA
CCTGGAGCTAACATGTTAATAACAGACCTAAGCTTCATCAAAGCTAGCGGAAAAAAATTAGCTGGGCTGATACTAACACA
TGCTCATGAAGATCATTTAGGAGGAGTTCAGTACCTTCTTCAAGATCTGGATTGCCCTATCTATACTACTAACTTTACAG
CTAATTTTTTGTTACTTAGATTAAAAGAGTATGACCCAACTTGTCAAGTTACTATTAATAAGATTACTCCTGGTCATAGA
TTTAATATTGGGCCATTTGCCATTGAGATGTTAACTCTAACTCATTCCGCACCAGAAATGCAAGCATTAATGATTAGAAC
TGATGCTGGCACTATTTTACATACTGGAGACTGGAAATTCGATGATGACCCTATTATTGGCAAAGAATCTGATAAAGTTT
TACTGCAAAAATACGGAGATGAAGGGATAACAGCTCTAGTATGCGACTCTACTAATGTATTTTATAGTGGTTTTTCAGGA
TCAGAAGGTAATCTGCAAAAAAGTTTAATTGATATTATTGGCAGTGCATCAGGATTAATAATTACTACAACATTTGCTTC
AAATTTAGCTAGATTGCAGTCATTAATTGTTGCTGCTAAGCATGCTGGCCGTAAAGTTATATTTGCAGGAAAAAGTTTGC
TACGGATGATGCGTGCTGCACAAGATAGTGGCTATCTGAATGATGCGAACGAGCAATTATTAGATATCAAAGAATTTAGT
AAATATCCACGTGAAAAATTAATGATTATCTCAACAGGGTGCCAAGGAGAGCCGTTAGCAGCAGTTAATAAGATAGTAAC
TGGAAGTCACCAACATATTAAACTACAGGCTAAAGATACAGTTATCTTTTCATCAAAAATTATTCCTGGTAATGAAAAAA
GAATATACAAACTATTTAATCAGTTAACTAGAGCACAAGTTAAAGTTATTACTGAAAAAGATAATTTTGTACATGTATCA
GGGCACCCTGCAATTGAAGAACTGAAAGCTATGTATAAGCTAACGCGACCTAAAATATGTATACCAGTACATGGCGAGCC
AATACATATACATGAACATGCTAATTTAGCCAAAAGTTGTGGAATTAAGAATGTTGTTGAACTCGAAAATGGTTCCATTC
TACAAATTAACTCAGACTCACATAAAATTTTGGGAAAAATAAAAGTGCAATATCTAGCAATAGATGGCAATTATATACTT
TCAGCAAATTCTGATATTTTTTATAAGCGTAGAAGAATGCAAGAAAATGGTATTGTTATTGCTACTTTGATTTTTAACAA
TAGAAATATTTTAGCTATTGAGCCAATATTATCATTTCCTGGCCTTCTAGATCCTAATCCTAAAAATGAACATGATCCTG
ATTACTCTATTGCTACATTAATTAAGCAAGAGCTTCAGCAAATATTGTCAATTAATAACAGTTCTAAAAAATCAATTAAA
AGAGATAAAATTGAAGAAGTTACAAAAAGCTGTATAAGGCGTATTATTAAACAAGAAGTTAATAAGAACCCAATAATTAT
GGTCAATATCCATAAATTATATCAACAAAGAAATTAG

Upstream 100 bases:

>100_bases
GTCTAACGATAATAATTATAGCTTAAATAATGTTGAAGAAGAATAAGTTAATATATATTATTTTTAAATAATATATATTT
GTTCTCACCTATAATCAAAA

Downstream 100 bases:

>100_bases
CAAATAACGCGTAATTACTAACATTGACTTAGCTGAATTGTTCAGATATATTACCATTATTCCATAGTATAATTAGTGAG
TTATGATATCTATAAATGAA

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 598; Mature: 598

Protein sequence:

>598_residues
MFLTKKLLLPIFSSINSISIMSNNLDQSNNESINSLIPTDKLVFIPIGGCNEIGMNVNIYHYQGEFIMVDCGAGFPSDFT
PGANMLITDLSFIKASGKKLAGLILTHAHEDHLGGVQYLLQDLDCPIYTTNFTANFLLLRLKEYDPTCQVTINKITPGHR
FNIGPFAIEMLTLTHSAPEMQALMIRTDAGTILHTGDWKFDDDPIIGKESDKVLLQKYGDEGITALVCDSTNVFYSGFSG
SEGNLQKSLIDIIGSASGLIITTTFASNLARLQSLIVAAKHAGRKVIFAGKSLLRMMRAAQDSGYLNDANEQLLDIKEFS
KYPREKLMIISTGCQGEPLAAVNKIVTGSHQHIKLQAKDTVIFSSKIIPGNEKRIYKLFNQLTRAQVKVITEKDNFVHVS
GHPAIEELKAMYKLTRPKICIPVHGEPIHIHEHANLAKSCGIKNVVELENGSILQINSDSHKILGKIKVQYLAIDGNYIL
SANSDIFYKRRRMQENGIVIATLIFNNRNILAIEPILSFPGLLDPNPKNEHDPDYSIATLIKQELQQILSINNSSKKSIK
RDKIEEVTKSCIRRIIKQEVNKNPIIMVNIHKLYQQRN

Sequences:

>Translated_598_residues
MFLTKKLLLPIFSSINSISIMSNNLDQSNNESINSLIPTDKLVFIPIGGCNEIGMNVNIYHYQGEFIMVDCGAGFPSDFT
PGANMLITDLSFIKASGKKLAGLILTHAHEDHLGGVQYLLQDLDCPIYTTNFTANFLLLRLKEYDPTCQVTINKITPGHR
FNIGPFAIEMLTLTHSAPEMQALMIRTDAGTILHTGDWKFDDDPIIGKESDKVLLQKYGDEGITALVCDSTNVFYSGFSG
SEGNLQKSLIDIIGSASGLIITTTFASNLARLQSLIVAAKHAGRKVIFAGKSLLRMMRAAQDSGYLNDANEQLLDIKEFS
KYPREKLMIISTGCQGEPLAAVNKIVTGSHQHIKLQAKDTVIFSSKIIPGNEKRIYKLFNQLTRAQVKVITEKDNFVHVS
GHPAIEELKAMYKLTRPKICIPVHGEPIHIHEHANLAKSCGIKNVVELENGSILQINSDSHKILGKIKVQYLAIDGNYIL
SANSDIFYKRRRMQENGIVIATLIFNNRNILAIEPILSFPGLLDPNPKNEHDPDYSIATLIKQELQQILSINNSSKKSIK
RDKIEEVTKSCIRRIIKQEVNKNPIIMVNIHKLYQQRN
>Mature_598_residues
MFLTKKLLLPIFSSINSISIMSNNLDQSNNESINSLIPTDKLVFIPIGGCNEIGMNVNIYHYQGEFIMVDCGAGFPSDFT
PGANMLITDLSFIKASGKKLAGLILTHAHEDHLGGVQYLLQDLDCPIYTTNFTANFLLLRLKEYDPTCQVTINKITPGHR
FNIGPFAIEMLTLTHSAPEMQALMIRTDAGTILHTGDWKFDDDPIIGKESDKVLLQKYGDEGITALVCDSTNVFYSGFSG
SEGNLQKSLIDIIGSASGLIITTTFASNLARLQSLIVAAKHAGRKVIFAGKSLLRMMRAAQDSGYLNDANEQLLDIKEFS
KYPREKLMIISTGCQGEPLAAVNKIVTGSHQHIKLQAKDTVIFSSKIIPGNEKRIYKLFNQLTRAQVKVITEKDNFVHVS
GHPAIEELKAMYKLTRPKICIPVHGEPIHIHEHANLAKSCGIKNVVELENGSILQINSDSHKILGKIKVQYLAIDGNYIL
SANSDIFYKRRRMQENGIVIATLIFNNRNILAIEPILSFPGLLDPNPKNEHDPDYSIATLIKQELQQILSINNSSKKSIK
RDKIEEVTKSCIRRIIKQEVNKNPIIMVNIHKLYQQRN

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 66622; Mature: 66622

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLTKKLLLPIFSSINSISIMSNNLDQSNNESINSLIPTDKLVFIPIGGCNEIGMNVNIY
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCEEEEE
HYQGEFIMVDCGAGFPSDFTPGANMLITDLSFIKASGKKLAGLILTHAHEDHLGGVQYLL
EEECCEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH
QDLDCPIYTTNFTANFLLLRLKEYDPTCQVTINKITPGHRFNIGPFAIEMLTLTHSAPEM
HHCCCCEEEECCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHEEEEEEEECCCCCE
QALMIRTDAGTILHTGDWKFDDDPIIGKESDKVLLQKYGDEGITALVCDSTNVFYSGFSG
EEEEEEECCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCEEEECCCC
SEGNLQKSLIDIIGSASGLIITTTFASNLARLQSLIVAAKHAGRKVIFAGKSLLRMMRAA
CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHH
QDSGYLNDANEQLLDIKEFSKYPREKLMIISTGCQGEPLAAVNKIVTGSHQHIKLQAKDT
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCE
VIFSSKIIPGNEKRIYKLFNQLTRAQVKVITEKDNFVHVSGHPAIEELKAMYKLTRPKIC
EEEEEEECCCCHHHHHHHHHHHHHEEEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCEE
IPVHGEPIHIHEHANLAKSCGIKNVVELENGSILQINSDSHKILGKIKVQYLAIDGNYIL
EEECCCEEEEECCCCHHHHCCCCCEEEECCCCEEEECCCCCEEEEEEEEEEEEEECCEEE
SANSDIFYKRRRMQENGIVIATLIFNNRNILAIEPILSFPGLLDPNPKNEHDPDYSIATL
ECCCCHHHHHHHHCCCCEEEEEEEECCCCEEEEECHHHCCCCCCCCCCCCCCCCHHHHHH
IKQELQQILSINNSSKKSIKRDKIEEVTKSCIRRIIKQEVNKNPIIMVNIHKLYQQRN
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCC
>Mature Secondary Structure
MFLTKKLLLPIFSSINSISIMSNNLDQSNNESINSLIPTDKLVFIPIGGCNEIGMNVNIY
CCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCEEEEE
HYQGEFIMVDCGAGFPSDFTPGANMLITDLSFIKASGKKLAGLILTHAHEDHLGGVQYLL
EEECCEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCCEEEEEEEECCCCCCCHHHHHH
QDLDCPIYTTNFTANFLLLRLKEYDPTCQVTINKITPGHRFNIGPFAIEMLTLTHSAPEM
HHCCCCEEEECCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCHHEEEEEEEECCCCCE
QALMIRTDAGTILHTGDWKFDDDPIIGKESDKVLLQKYGDEGITALVCDSTNVFYSGFSG
EEEEEEECCCCEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCEEEECCCC
SEGNLQKSLIDIIGSASGLIITTTFASNLARLQSLIVAAKHAGRKVIFAGKSLLRMMRAA
CCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHH
QDSGYLNDANEQLLDIKEFSKYPREKLMIISTGCQGEPLAAVNKIVTGSHQHIKLQAKDT
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCE
VIFSSKIIPGNEKRIYKLFNQLTRAQVKVITEKDNFVHVSGHPAIEELKAMYKLTRPKIC
EEEEEEECCCCHHHHHHHHHHHHHEEEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCEE
IPVHGEPIHIHEHANLAKSCGIKNVVELENGSILQINSDSHKILGKIKVQYLAIDGNYIL
EEECCCEEEEECCCCHHHHCCCCCEEEECCCCEEEECCCCCEEEEEEEEEEEEEECCEEE
SANSDIFYKRRRMQENGIVIATLIFNNRNILAIEPILSFPGLLDPNPKNEHDPDYSIATL
ECCCCHHHHHHHHCCCCEEEEEEEECCCCEEEEECHHHCCCCCCCCCCCCCCCCHHHHHH
IKQELQQILSINNSSKKSIKRDKIEEVTKSCIRRIIKQEVNKNPIIMVNIHKLYQQRN
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]