BacMap

Definition	Orientia tsutsugamushi str. Ikeda, complete genome.
Accession	NC_010793
Length	2,008,987

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The map label for this gene is yahD [C]

Identifier: 189183223

GI number: 189183223

Start: 329027

End: 329575

Strand: Direct

Name: yahD [C]

Synonym: OTT_0316

Alternate gene names: 189183223

Gene position: 329027-329575 (Clockwise)

Preceding gene: 189183222

Following gene: 189183224

Centisome position: 16.38

GC content: 30.78

Gene sequence:

>549_bases
TTGTTCAATTCAAAATATAAAGATGGCACTACTGCTTTATCTGTTGCTTTGAAATATAAGAATCTACCTATTGCTGAGAT
TTTGCTGAACAATGGAGCTAACGTAAACGCACAAGATAATGATGGGCACACTGCTTTACATCTTGTTGTTGATACAATTC
AAGTATATTATGAATTTTTCGAAAAATATCCTATCTATTGCAATGATCATATAGCATTACTGCTAAAATATAATGCTGAT
GTAAATATCGAGAATAATCAAGGTAATACACCTTTATCTGATGCTGTTGAATGCAGATGTATAGAACCTTTAGCAATTAT
GCTAAAACATAATTCTACTGGTATTAATAAAAAATATGATGAAGGAGAAACATTACTACATATTGCTGTTCGTAATAAAA
TCATAGATATTATACAGCTTTTGATTGATTATGGAGCAGATATTGATGCAAAAGATGATAACGGCATGACTACTATAGAT
TATGCTGCTAAAAGCGGTAATGCAGATATATTCAACTTTCTAACGGAACAATCTGTACCATGGTATTAG

Upstream 100 bases:

>100_bases
TATATGATATTCAAATCTAAGGCTAAATATTTCTTACATAGCGCTATTCAAGATGGTGATATTAAAAAAGTGAAGCAGCT
TATTAATAAGGATATTACAC

Downstream 100 bases:

>100_bases
GTTTTAACAGATAGCTAATATGTTAACATTAAAAAGAGAAGTTAATATGAATGTTTTGAAATCACTTTTACAACAGTGTT
ATGCTGTAATGCTAATATCT

Product: ankyrin repeat-containing protein 03_05

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MFNSKYKDGTTALSVALKYKNLPIAEILLNNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPIYCNDHIALLLKYNAD
VNIENNQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTID
YAAKSGNADIFNFLTEQSVPWY

Sequences:

>Translated_182_residues
MFNSKYKDGTTALSVALKYKNLPIAEILLNNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPIYCNDHIALLLKYNAD
VNIENNQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTID
YAAKSGNADIFNFLTEQSVPWY
>Mature_182_residues
MFNSKYKDGTTALSVALKYKNLPIAEILLNNGANVNAQDNDGHTALHLVVDTIQVYYEFFEKYPIYCNDHIALLLKYNAD
VNIENNQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYDEGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTID
YAAKSGNADIFNFLTEQSVPWY

Specific function: Unknown

COG id: COG0666

COG function: function code R; FOG: Ankyrin repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 18 ANK repeats [H]

Homologues:

Organism=Homo sapiens, GI62988328, Length=172, Percent_Identity=31.9767441860465, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI268607595, Length=172, Percent_Identity=31.9767441860465, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI32967601, Length=172, Percent_Identity=29.6511627906977, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI52426735, Length=175, Percent_Identity=30.8571428571429, Blast_Score=77, Evalue=7e-15,
Organism=Homo sapiens, GI52426737, Length=175, Percent_Identity=30.8571428571429, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI188595682, Length=175, Percent_Identity=30.8571428571429, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI62177127, Length=197, Percent_Identity=28.9340101522843, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI89363047, Length=175, Percent_Identity=29.1428571428571, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI70780357, Length=175, Percent_Identity=29.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780355, Length=175, Percent_Identity=29.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780353, Length=175, Percent_Identity=29.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI70780359, Length=175, Percent_Identity=29.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI215598574, Length=175, Percent_Identity=29.1428571428571, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI116063534, Length=178, Percent_Identity=30.3370786516854, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI224809478, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI224809476, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI224809472, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI224809470, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI224809468, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI30348954, Length=177, Percent_Identity=28.8135593220339, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI224809474, Length=170, Percent_Identity=27.0588235294118, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI16975496, Length=171, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI116875852, Length=149, Percent_Identity=34.8993288590604, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI110815813, Length=164, Percent_Identity=26.219512195122, Blast_Score=64, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71981389, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17542700, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25145251, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71981411, Length=170, Percent_Identity=27.6470588235294, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71981414, Length=170, Percent_Identity=27.6470588235294, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161082085, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161082099, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161082096, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161082081, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161082110, Length=174, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI161082106, Length=174, Percent_Identity=29.3103448275862, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281359521, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281359519, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558752, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558750, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558756, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28558754, Length=174, Percent_Identity=29.8850574712644, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI161082089, Length=174, Percent_Identity=29.3103448275862, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI161082092, Length=175, Percent_Identity=28, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24639454, Length=148, Percent_Identity=33.1081081081081, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45550629, Length=177, Percent_Identity=28.8135593220339, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581842, Length=171, Percent_Identity=29.2397660818713, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28571867, Length=173, Percent_Identity=29.4797687861272, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28571865, Length=173, Percent_Identity=29.4797687861272, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281362676, Length=171, Percent_Identity=30.4093567251462, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281364453, Length=171, Percent_Identity=29.2397660818713, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002110
- InterPro:   IPR020683
- InterPro:   IPR007685 [H]

Pfam domain/function: PF00023 Ank; PF04607 RelA_SpoT [H]

EC number: NA

Molecular weight: Translated: 20422; Mature: 20422

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50088 ANK_REPEAT ; PS50297 ANK_REP_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNSKYKDGTTALSVALKYKNLPIAEILLNNGANVNAQDNDGHTALHLVVDTIQVYYEFF
CCCCCCCCCCEEEEEEEEECCCCHHHHEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
EKYPIYCNDHIALLLKYNADVNIENNQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYD
HCCCCEECCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCC
EGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADIFNFLTEQSVP
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCC
WY
CC
>Mature Secondary Structure
MFNSKYKDGTTALSVALKYKNLPIAEILLNNGANVNAQDNDGHTALHLVVDTIQVYYEFF
CCCCCCCCCCEEEEEEEEECCCCHHHHEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHH
EKYPIYCNDHIALLLKYNADVNIENNQGNTPLSDAVECRCIEPLAIMLKHNSTGINKKYD
HCCCCEECCCEEEEEEECCCEEEECCCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCC
EGETLLHIAVRNKIIDIIQLLIDYGADIDAKDDNGMTTIDYAAKSGNADIFNFLTEQSVP
CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCC
WY
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA