| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189183220
Identifier: 189183220
GI number: 189183220
Start: 324923
End: 326638
Strand: Direct
Name: 189183220
Synonym: OTT_0313
Alternate gene names: NA
Gene position: 324923-326638 (Clockwise)
Preceding gene: 189183219
Following gene: 189183221
Centisome position: 16.17
GC content: 30.71
Gene sequence:
>1716_bases ATGGCGCAAAATTTGCGTAATTTTGCAAGCAATAATTGCAAAATTGCTAATAATAACAGTAGCAATAATGCAACTGTCTT TTATCGTTTTATTGGAAATTTTGTTCCAGCAGAATGGAAAGATCTGATTGGAGATAATGCTAAAGCTTTAAGCAAAACAT CTAAACAGCTTTTATCATTGATGGTATATAGACTACAAATCTATTACAACAAAGATATAGATGAATTACAGGAAAGTTAT TACTTTTTTGAAAAGGAGTTAAACCTTCGTTACCGCAGAGTTAGGCAATGCTTGGTTGAATTAAGAAATGCAGGTTTTAT TAAAGTTGAAAATAGAACAATAATTAAAGGCAATCTCAAGTTACGTAATGTTCCATGTATAAAACTTCTAAAAAATTTTC AGCGTTTCACTGAAAAAGAAACAAAAGGAGAAAAAATTATTGATCTAACCCAAAAAATTTTTCGCTCCAACCTGAAAGAA ATTTCAGGTGAACCTGAAAAAAGTTTCAGGTACATATATAGATATAATAATAATAAAAAAAATAATAATAGATCTAGATC TACTGAAGATAAGTTAGTAGAGAATGATCAAAATAAAAATGAAGATCAACAGCAAAATTTGAAGTTTAAATATACGGAAT ATGATGATTTTATAGAAATTGAGTTAGTAGAAAATGAAAAAGAAAATCAACAGCAACAACAGAATTTGAATTTCTATGAG CTTAGTGATGTTAGTAATGACAAGCCATCAAACAAGGATTATGAGCAAAATAGTGAGTTAGCAACTCCAGCTATTACTAA AGATTCAGAGGTTGAAAAGAATGAATGCTATCCCAAAAGAAAAAGACTAGCAGATTATTATCCACTAACACCAGAAGATG CAGTTATACTACAACGTATGTCTAGTAGAAGCTTCAACATATACTTCATAAATCAATTACTGTTGAAGTTATCAAATAAA TATCCAAACCGTCATTTTGCAAATAAGATAGCAGTGCTAAACTATATGGCAAAAGCCTTAGCAAATGAATTACTAACTAC TGATCAGGCTAATAGTGGAAATTTTAGATTTAATGATGTAGGAAGATTTAAAGAACAGTATCTAGCAAATATTGAATCTG GTACAGATCGTAGTATGAAGGCTCAGTTGAAGCGTAAAATAGCTGGAGTCTTTGAAGCAGATATGGCTTATCAAATTTTA ACATCTTGTGATTTTGGGGTAGCGGTTAAAAACAAATATTACATCAAGTTGCTTAAGAATATTACACTGTCAGATCATAT TAAATTCAAGATACTACAGGAGGTACGAGCTGTGTATGGCAACGATATTGAGCAGTTACAAGTTATACCATTTGACGAAT CAAAACAAGTTGCCAATAGCACAACTGAGTATCAAAAAACCACAGTTTTACAGCAACAAATAAGTGATGAAGATTACCTT TCAGAACTTAGTAAAGAGCTAGGCTCCAACTCGACTTGGTACAAAGTACGAGAATCTTTAGTCACATGTTACGGTCAAGC TATCGATAAATCATGGTTTAGCAAATTAGAAGTTATAAACGAAGATAGTGTTAACAAAAAAATATTCATCAAAGCAAAAA CAGAATTTGAAGATAGTTACATCAGAGAGAACTATCTGAAAGATCTTGAGCCCGCTTTTAAAGCTCAAGGATTTTCTTTC GAGTTAGTTAAGTTTAGTAATTTTAATAAAATTTAA
Upstream 100 bases:
>100_bases AGCTACTAAATCGCTATATTTACGCGGTATAAAAACGTGGTTTTCGATAGCGAAAATTGCCTGAACCACCTGCTATATCT GACATTTTTGGAGGTTAGAA
Downstream 100 bases:
>100_bases AGGGTGATATGGAAAAAGATCTTGCAAAGATTGCTCCAAGTAATATTCAGGCAGAGCAAATGATACTTGGAGCAATTCTG ATTAACAATCGTGCGCTATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 571; Mature: 570
Protein sequence:
>571_residues MAQNLRNFASNNCKIANNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSLMVYRLQIYYNKDIDELQESY YFFEKELNLRYRRVRQCLVELRNAGFIKVENRTIIKGNLKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNK YPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQIL TSCDFGVAVKNKYYIKLLKNITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLEPAFKAQGFSF ELVKFSNFNKI
Sequences:
>Translated_571_residues MAQNLRNFASNNCKIANNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSLMVYRLQIYYNKDIDELQESY YFFEKELNLRYRRVRQCLVELRNAGFIKVENRTIIKGNLKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKE ISGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNK YPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQIL TSCDFGVAVKNKYYIKLLKNITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLEPAFKAQGFSF ELVKFSNFNKI >Mature_570_residues AQNLRNFASNNCKIANNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSLMVYRLQIYYNKDIDELQESYY FFEKELNLRYRRVRQCLVELRNAGFIKVENRTIIKGNLKLRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEI SGEPEKSFRYIYRYNNNKKNNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYEL SDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRMSSRSFNIYFINQLLLKLSNKY PNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDVGRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILT SCDFGVAVKNKYYIKLLKNITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYLS ELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSYIRENYLKDLEPAFKAQGFSFE LVKFSNFNKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67070; Mature: 66939
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQNLRNFASNNCKIANNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSL CCCCHHHHHCCCCEEECCCCCCCCEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHH MVYRLQIYYNKDIDELQESYYFFEKELNLRYRRVRQCLVELRNAGFIKVENRTIIKGNLK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCE LRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYRYNNNKK ECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCC NNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE CCCCCCCHHHHHHHCCCCCCCCHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHCCCEEE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRM ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHHHHH SSRSFNIYFINQLLLKLSNKYPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDV HCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHH GRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILTSCDFGVAVKNKYYIKLLKN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHC ITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL CCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHCCHHHHHHHHHHHHHCCCHHHH SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSY HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHH IRENYLKDLEPAFKAQGFSFELVKFSNFNKI HHHHHHHHCCHHHHCCCCEEEEEEECCCCCC >Mature Secondary Structure AQNLRNFASNNCKIANNNSSNNATVFYRFIGNFVPAEWKDLIGDNAKALSKTSKQLLSL CCCHHHHHCCCCEEECCCCCCCCEEEEEHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHH MVYRLQIYYNKDIDELQESYYFFEKELNLRYRRVRQCLVELRNAGFIKVENRTIIKGNLK HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCE LRNVPCIKLLKNFQRFTEKETKGEKIIDLTQKIFRSNLKEISGEPEKSFRYIYRYNNNKK ECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCC NNNRSRSTEDKLVENDQNKNEDQQQNLKFKYTEYDDFIEIELVENEKENQQQQQNLNFYE CCCCCCCHHHHHHHCCCCCCCCHHHCCCEEEECCCCEEEEEEECCCHHHHHHHHCCCEEE LSDVSNDKPSNKDYEQNSELATPAITKDSEVEKNECYPKRKRLADYYPLTPEDAVILQRM ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCHHHHHHHH SSRSFNIYFINQLLLKLSNKYPNRHFANKIAVLNYMAKALANELLTTDQANSGNFRFNDV HCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHH GRFKEQYLANIESGTDRSMKAQLKRKIAGVFEADMAYQILTSCDFGVAVKNKYYIKLLKN HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHC ITLSDHIKFKILQEVRAVYGNDIEQLQVIPFDESKQVANSTTEYQKTTVLQQQISDEDYL CCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCCCHHHHCCHHHHHHHHHHHHHCCCHHHH SELSKELGSNSTWYKVRESLVTCYGQAIDKSWFSKLEVINEDSVNKKIFIKAKTEFEDSY HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHH IRENYLKDLEPAFKAQGFSFELVKFSNFNKI HHHHHHHHCCHHHHCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA