Click here to switch to the map view.

The map label for this gene is traD [C]

Identifier: 189183017

GI number: 189183017

Start: 105092

End: 105421

Strand: Direct

Name: traD [C]

Synonym: OTT_0110

Alternate gene names: 189183017

Gene position: 105092-105421 (Clockwise)

Preceding gene: 189183016

Following gene: 189183018

Centisome position: 5.23

GC content: 34.24

Gene sequence:

>330_bases
GTGATAATCTCAATTGTTTTCTTTACGGCTCAAGGTAAAAAAACGATTATTAAGGCTAAAATTAGAGGTGCTGATTTTGT
AGGATACAAAAAAAATGGCCTAGCCAAAATGCTAAAAAGCGCTAAAAAGGCCTCGAAAATCTGTTTTGGAGGTTTACCAT
TAGTAAAGAATAGTGAAAGGCTGCACATTCTGATTACTGGAACAACAGGTACTGGTAAAACTAATATGCTTAATGAACTG
CTACCACAAATTCGATTACACAAAGATCGAGCAATAATTGTAGACACAACTGGAGCTTTTACTGATAGATTTTTTGATTC
TAAACGCTAA

Upstream 100 bases:

>100_bases
TGAGTTTTATACAGGCAAACATGGATTTAAAATACAGTAATTATAGCAATTCCTAATCAATTCAGCATTATTAGAAAGCT
TAATTGTTTTTGCTATTGGT

Downstream 100 bases:

>100_bases
TTTAGGATAAGAAAAAATATGAAAAGTAGTGAGTAAAAGGTATACAAGAGATAATGTATAATTATATATTATCTGTAGTT
TCAATTAATAACAGTTTATT

Product: putative conjugative transfer protein TraD

Products: NA

Alternate protein names: Conjugative Transfer Protein TraD

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MIISIVFFTAQGKKTIIKAKIRGADFVGYKKNGLAKMLKSAKKASKICFGGLPLVKNSERLHILITGTTGTGKTNMLNEL
LPQIRLHKDRAIIVDTTGAFTDRFFDSKR

Sequences:

>Translated_109_residues
MIISIVFFTAQGKKTIIKAKIRGADFVGYKKNGLAKMLKSAKKASKICFGGLPLVKNSERLHILITGTTGTGKTNMLNEL
LPQIRLHKDRAIIVDTTGAFTDRFFDSKR
>Mature_109_residues
MIISIVFFTAQGKKTIIKAKIRGADFVGYKKNGLAKMLKSAKKASKICFGGLPLVKNSERLHILITGTTGTGKTNMLNEL
LPQIRLHKDRAIIVDTTGAFTDRFFDSKR

Specific function: Trad Is A Cell Envelope Protein. The Function Of Trad Is Unknown But It Is Essential For DNA Transfer. It May Form Or May Be Part Of A Non-Specific Pore For DNA Export, Or It May Directly Energizes DNA Transport. [C]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12055; Mature: 12055

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIISIVFFTAQGKKTIIKAKIRGADFVGYKKNGLAKMLKSAKKASKICFGGLPLVKNSER
CEEEEEEEECCCCEEEEEEEECCCEEECCCCCCHHHHHHHHHHHCCEEECCCCCEECCCE
LHILITGTTGTGKTNMLNELLPQIRLHKDRAIIVDTTGAFTDRFFDSKR
EEEEEEECCCCCCHHHHHHHHHHHEECCCCEEEEECCCCCHHHHCCCCC
>Mature Secondary Structure
MIISIVFFTAQGKKTIIKAKIRGADFVGYKKNGLAKMLKSAKKASKICFGGLPLVKNSER
CEEEEEEEECCCCEEEEEEEECCCEEECCCCCCHHHHHHHHHHHCCEEECCCCCEECCCE
LHILITGTTGTGKTNMLNELLPQIRLHKDRAIIVDTTGAFTDRFFDSKR
EEEEEEECCCCCCHHHHHHHHHHHEECCCCEEEEECCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA