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The map label for this gene is rci [H]

Identifier: 189182948

GI number: 189182948

Start: 46875

End: 47690

Strand: Reverse

Name: rci [H]

Synonym: OTT_0041

Alternate gene names: 189182948

Gene position: 47690-46875 (Counterclockwise)

Preceding gene: 189182951

Following gene: 189182947

Centisome position: 2.37

GC content: 33.82

Gene sequence:

>816_bases
TTGCAGAAAGATGCTGCAAGAATATATAATTATGGGAAACTGTTATTTTTAAAAAAGATAAACGAGGTTAAAAGGAATGA
TATTCAACAAATATTCAATGATATCAGCAAAGAGGGAAAATATGCGACAGCAAATCTATTGCTAGCAACCTTACGCACTA
TGTTTAATAAGGCAATAAAATGGGGATTAATAGAAAACAATCCTACTCTAGGAATAGAGCAGCATAAACTGCAAGCAAGA
GAGAGACGTCTAAGTTACGATAAAATGGGTAGACTTTTACACGTATTATGTGGAGAAACAACTCCATTGATAAGAGATTT
TGCATTACTAGCGTTATATACTGGAGCTAGAAAAAGTAATGTATTAGAGATGGAATGGGACAATATAGATTTTGAAAGAA
AAATATGGCATATACCAAAAACTAAGAACGGAAAGGCGCAAAATATACCATTAACAGATGAGGCAATGGAAATATTGCAA
GCAAGGAAATTCACATCTGAAAGTAAATGGGTACTACCAAGTGCTACTAGCGAAAGTGGACACTTAGAGCGGCCAAATAA
CTCATGGCATAGGGTTTGTAAAAAGGCTGGCATAAAAAATTTAAGGATACACGATCTAAGAAGGACGTTTGCAAGTTGTA
TGGGAGATGTAGGTGCAAGTCAGAGGACAATTAGTATAGCATTGAATCATATTAGTCCAGAATCAACAATTAGTTATACT
ATACCTTGCCTGAAGTTAGTACAAGAGTATATGTCTAAGGCTACACAAATAATTAATGGATGTGCTAGAAGTTATAATAT
TTATAATATTATCTGA

Upstream 100 bases:

>100_bases
GAATCGTATAAAAGAAAGAGAAAGAAAAGCTAACGATATTACATTCAAAGAGCTGTGTTATAAGTATATTGAAGAGTATG
CCAAAATATATACTATAAAC

Downstream 100 bases:

>100_bases
CTAATATAAAAGTTGTGGTAAGAATAGTGCAACTTCATGTCGCACATGCATGTATGTAAACTAATTATTGCAGGTAAAAT
CTGTGTTTGAAGATGTTTAG

Product: putative integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MQKDAARIYNYGKLLFLKKINEVKRNDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQAR
ERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ
ARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT
IPCLKLVQEYMSKATQIINGCARSYNIYNII

Sequences:

>Translated_271_residues
MQKDAARIYNYGKLLFLKKINEVKRNDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQAR
ERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ
ARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT
IPCLKLVQEYMSKATQIINGCARSYNIYNII
>Mature_271_residues
MQKDAARIYNYGKLLFLKKINEVKRNDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQAR
ERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ
ARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT
IPCLKLVQEYMSKATQIINGCARSYNIYNII

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 31110; Mature: 31110

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKDAARIYNYGKLLFLKKINEVKRNDIQQIFNDISKEGKYATANLLLATLRTMFNKAIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
WGLIENNPTLGIEQHKLQARERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSN
CCEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
VLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSATSESG
EEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCC
HLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHH
IPCLKLVQEYMSKATQIINGCARSYNIYNII
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MQKDAARIYNYGKLLFLKKINEVKRNDIQQIFNDISKEGKYATANLLLATLRTMFNKAIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
WGLIENNPTLGIEQHKLQARERRLSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSN
CCEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
VLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSATSESG
EEEEECCCCCHHHHEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCC
HLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHH
IPCLKLVQEYMSKATQIINGCARSYNIYNII
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]