| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189026209
Identifier: 189026209
GI number: 189026209
Start: 1072011
End: 1072895
Strand: Direct
Name: 189026209
Synonym: TPASS_0986
Alternate gene names: NA
Gene position: 1072011-1072895 (Clockwise)
Preceding gene: 189026208
Following gene: 189026211
Centisome position: 94.08
GC content: 53.22
Gene sequence:
>885_bases ATGGCTTTTACTGAGAAGCAAAAGGGTACTTTGTGCCTAATGTGCTCGAGTTTTTGCTTTAGCGTGATGAGCGTCTTTGT GCGTCTTGCAGGGGATCTCCCCTCTATTCAGAAGGCATTTACGCGTAACCTGGTCTCAACGCTCATCTCGGGATCTATGC TCTTTCGTGCGCGTACCCGCGTCCACGTGCAGGATCTCCCCATGCTCTCCTTGCGTACCGTGTGCGGGACGCTAGCAATC GTCGCAAACTTCTACGCAGTAGAACGCTTAACATTGGCAGACGCGTCGTTGCTTTCGAAGCTCTCTCCGTTCTTTACCAT ACTGTTTTCTTGCCTTTTCTTGGGAGAACGCATTGCGCCGTATCAAGTCGTCGCCCTCTGTGGTGCCTTTGCTGCAGGCA CGCTCGTGGTCAAGCCGAGTCACACCCTTTCTCACCGTGTATTTCCCGCGTGTATTGGCGCAGTAGGAGGCATGATGACG GGAGCTGCGCACACGTGCGTACGCTACCTCTCCACCCGTGGCGTAGAGAAGTTCTTGGTTATCTTTTTCTTTTCCTTCGG ATCGCTGCTATTGCTGCTCCCTGCATTTATATGGCAGTACCAACCGATGAGCTCACCGCAAGTGCTTACGCTGTGGGCCG CAGGAGTGGCAGTAGCAGGTGCACAGTTTTTTCTCACTGTTGCGTATCGATACGCGCCAAAAAAGTCGATTCCAATTGAC TATACCCACATCTTATTTTCGACGGGCATCGGTTTCTTGTACTTTAAAGAGGTGCCCGACCACTGGACCGTAGCGGGCAT CGGTATCATTCTCGCCATTGCCCTGTACGTGTTTGCGCGCGAGCGTGAACGGAAAGAACCCACCGTGCCGTCGCACACAC GCTAG
Upstream 100 bases:
>100_bases GATAAGCGTCAGCTTGACGAGTTACACCTCACTGTACACGTCTAGGGGCATCGCTACTCGCTCGTCGGCGTAAAATACCT ACCAGGGGGGGGAGGGGTAC
Downstream 100 bases:
>100_bases AGCCGATGGCACGCACGTACGCGAAGCACATGGTCTACCCCATGCTTAGATTTTTCTCGGTAAAAGAATGAGGCAGGTGC GCGTGACGTGCACAGGAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MAFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTRVHVQDLPMLSLRTVCGTLAI VANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAPYQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMT GAAHTCVRYLSTRGVEKFLVIFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR
Sequences:
>Translated_294_residues MAFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTRVHVQDLPMLSLRTVCGTLAI VANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAPYQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMT GAAHTCVRYLSTRGVEKFLVIFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR >Mature_293_residues AFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTRVHVQDLPMLSLRTVCGTLAIV ANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAPYQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMTG AAHTCVRYLSTRGVEKFLVIFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPIDY THILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32366; Mature: 32235
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTR CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH VHVQDLPMLSLRTVCGTLAIVANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAP EEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH YQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMTGAAHTCVRYLSTRGVEKFLV HHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID HHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure AFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTR CCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH VHVQDLPMLSLRTVCGTLAIVANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAP EEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH YQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMTGAAHTCVRYLSTRGVEKFLV HHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH IFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID HHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9252185 [H]