Definition Treponema pallidum subsp. pallidum SS14, complete genome.
Accession NC_010741
Length 1,139,457

Click here to switch to the map view.

The map label for this gene is 189026209

Identifier: 189026209

GI number: 189026209

Start: 1072011

End: 1072895

Strand: Direct

Name: 189026209

Synonym: TPASS_0986

Alternate gene names: NA

Gene position: 1072011-1072895 (Clockwise)

Preceding gene: 189026208

Following gene: 189026211

Centisome position: 94.08

GC content: 53.22

Gene sequence:

>885_bases
ATGGCTTTTACTGAGAAGCAAAAGGGTACTTTGTGCCTAATGTGCTCGAGTTTTTGCTTTAGCGTGATGAGCGTCTTTGT
GCGTCTTGCAGGGGATCTCCCCTCTATTCAGAAGGCATTTACGCGTAACCTGGTCTCAACGCTCATCTCGGGATCTATGC
TCTTTCGTGCGCGTACCCGCGTCCACGTGCAGGATCTCCCCATGCTCTCCTTGCGTACCGTGTGCGGGACGCTAGCAATC
GTCGCAAACTTCTACGCAGTAGAACGCTTAACATTGGCAGACGCGTCGTTGCTTTCGAAGCTCTCTCCGTTCTTTACCAT
ACTGTTTTCTTGCCTTTTCTTGGGAGAACGCATTGCGCCGTATCAAGTCGTCGCCCTCTGTGGTGCCTTTGCTGCAGGCA
CGCTCGTGGTCAAGCCGAGTCACACCCTTTCTCACCGTGTATTTCCCGCGTGTATTGGCGCAGTAGGAGGCATGATGACG
GGAGCTGCGCACACGTGCGTACGCTACCTCTCCACCCGTGGCGTAGAGAAGTTCTTGGTTATCTTTTTCTTTTCCTTCGG
ATCGCTGCTATTGCTGCTCCCTGCATTTATATGGCAGTACCAACCGATGAGCTCACCGCAAGTGCTTACGCTGTGGGCCG
CAGGAGTGGCAGTAGCAGGTGCACAGTTTTTTCTCACTGTTGCGTATCGATACGCGCCAAAAAAGTCGATTCCAATTGAC
TATACCCACATCTTATTTTCGACGGGCATCGGTTTCTTGTACTTTAAAGAGGTGCCCGACCACTGGACCGTAGCGGGCAT
CGGTATCATTCTCGCCATTGCCCTGTACGTGTTTGCGCGCGAGCGTGAACGGAAAGAACCCACCGTGCCGTCGCACACAC
GCTAG

Upstream 100 bases:

>100_bases
GATAAGCGTCAGCTTGACGAGTTACACCTCACTGTACACGTCTAGGGGCATCGCTACTCGCTCGTCGGCGTAAAATACCT
ACCAGGGGGGGGAGGGGTAC

Downstream 100 bases:

>100_bases
AGCCGATGGCACGCACGTACGCGAAGCACATGGTCTACCCCATGCTTAGATTTTTCTCGGTAAAAGAATGAGGCAGGTGC
GCGTGACGTGCACAGGAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MAFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTRVHVQDLPMLSLRTVCGTLAI
VANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAPYQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMT
GAAHTCVRYLSTRGVEKFLVIFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID
YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR

Sequences:

>Translated_294_residues
MAFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTRVHVQDLPMLSLRTVCGTLAI
VANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAPYQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMT
GAAHTCVRYLSTRGVEKFLVIFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID
YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR
>Mature_293_residues
AFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTRVHVQDLPMLSLRTVCGTLAIV
ANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAPYQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMTG
AAHTCVRYLSTRGVEKFLVIFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPIDY
THILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32366; Mature: 32235

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AFTEKQKGTLCLMCSSFCFSVMSVFVRLAGDLPSIQKAFTRNLVSTLISGSMLFRARTR
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
VHVQDLPMLSLRTVCGTLAIVANFYAVERLTLADASLLSKLSPFFTILFSCLFLGERIAP
EEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
YQVVALCGAFAAGTLVVKPSHTLSHRVFPACIGAVGGMMTGAAHTCVRYLSTRGVEKFLV
HHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
IFFFSFGSLLLLLPAFIWQYQPMSSPQVLTLWAAGVAVAGAQFFLTVAYRYAPKKSIPID
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
YTHILFSTGIGFLYFKEVPDHWTVAGIGIILAIALYVFARERERKEPTVPSHTR
HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]