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The map label for this gene is ycfH [C]

Identifier: 189026202

GI number: 189026202

Start: 1063686

End: 1064459

Strand: Direct

Name: ycfH [C]

Synonym: TPASS_0979

Alternate gene names: 189026202

Gene position: 1063686-1064459 (Clockwise)

Preceding gene: 189026201

Following gene: 189026203

Centisome position: 93.35

GC content: 51.68

Gene sequence:

>774_bases
ATGCAGATCTTCGATACTCACGCCCACATCGGTCTTATTCACCCAGATCCCGTAGAGCGGCTGCGGGTAGTACAAGAGGC
ACGACGAGCTTCTGTCACCCGCATCATGAGTATTTGCAACAGCCTTCATGACTTTGCCGCCGTATACGAGACGCTCCAGT
TCTCACCCTCTGTCTATCACGCCGTAGGTGTCTCCCCTTCTGAGGTCATGGCCCCGGGGAAGGATTGGATAGATACTATT
CAAAAAAGCCTACAACTCCCTCAGGTAGTTGCCTTAGGCGAGACCGGATTGGACTACTGTAAAAAGTACGGTGATAAACG
CTCCCAGATTGGGCTTTTTATCACTCAATTGGATATTGCTTCAAAGGCAAAAAAACCAGTTATCATCCACAACCGTGGTG
CGGGCCAGGATATCCTGGACATCCTCAGCGAGCGCATTCCCGACCAAGGCGGTGTGTTCCACTGTTATTCTGAGGACGCA
GAGTACGCACGTATGGCGCTGGATTTACCTGTGTACTTTTCTTTCGCGGGGAATTTAACTTACCGGAATGCACGAAATCT
CCATGAGACTGTATTGGCCCTCCCGCTTGACCGAATTCTAGTGGAATCCGAAAGCCCGTTTATGTCCCCCGCCACGTACC
GCAACAAGCGCAACCGACCGGCGCACACAGTTGAAACCGTGGAGTTCATGGCTGAGCTCCTTGATATGGACATGCTTGAG
CTTGCCGACCAGCTGTGGAAAAACAGCTGTGCGTGTTTTCACCTTCCTGAGTGA

Upstream 100 bases:

>100_bases
TTTGTTCTCCGCAAATACCGCGCGTGTGTGCCGCGCGTTGCGCTTCCGGCGTACCAGGGCGGTACGCGCGAGCGCCTCAC
AGCACTCAGGATATTAGCCC

Downstream 100 bases:

>100_bases
GCAGCAGATGCAACAACACGCCTTATATCATCCGGTTTCTATTGGCCCGTTGTCTCTCAAGGGGAATGTGTTTTTTGCTC
CCGTTGCAGGCTATTCTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MQIFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVYETLQFSPSVYHAVGVSPSEVMAPGKDWIDTI
QKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIPDQGGVFHCYSEDA
EYARMALDLPVYFSFAGNLTYRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDMLE
LADQLWKNSCACFHLPE

Sequences:

>Translated_257_residues
MQIFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVYETLQFSPSVYHAVGVSPSEVMAPGKDWIDTI
QKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIPDQGGVFHCYSEDA
EYARMALDLPVYFSFAGNLTYRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDMLE
LADQLWKNSCACFHLPE
>Mature_257_residues
MQIFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVYETLQFSPSVYHAVGVSPSEVMAPGKDWIDTI
QKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIPDQGGVFHCYSEDA
EYARMALDLPVYFSFAGNLTYRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDMLE
LADQLWKNSCACFHLPE

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=262, Percent_Identity=25.9541984732824, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI225903439, Length=244, Percent_Identity=26.2295081967213, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI225903424, Length=183, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=35.2490421455939, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=25.6809338521401, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI48994985, Length=232, Percent_Identity=25, Blast_Score=78, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17559024, Length=289, Percent_Identity=25.2595155709343, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17565396, Length=178, Percent_Identity=27.5280898876405, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648690, Length=203, Percent_Identity=31.5270935960591, Blast_Score=87, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28975; Mature: 28975

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVYETLQFSPSVYH
CCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AVGVSPSEVMAPGKDWIDTIQKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIA
EECCCHHHHCCCCHHHHHHHHHHHCCCHHEEECCCCHHHHHHHCCCHHHHHEEEEEEHHH
SKAKKPVIIHNRGAGQDILDILSERIPDQGGVFHCYSEDAEYARMALDLPVYFSFAGNLT
HHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCEEEEECCCCE
YRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDMLE
ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCHHHH
LADQLWKNSCACFHLPE
HHHHHHHCCCCEEECCC
>Mature Secondary Structure
MQIFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVYETLQFSPSVYH
CCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
AVGVSPSEVMAPGKDWIDTIQKSLQLPQVVALGETGLDYCKKYGDKRSQIGLFITQLDIA
EECCCHHHHCCCCHHHHHHHHHHHCCCHHEEECCCCHHHHHHHCCCHHHHHEEEEEEHHH
SKAKKPVIIHNRGAGQDILDILSERIPDQGGVFHCYSEDAEYARMALDLPVYFSFAGNLT
HHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCEEEEECCCCE
YRNARNLHETVLALPLDRILVESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDMLE
ECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCHHHH
LADQLWKNSCACFHLPE
HHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]