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The map label for this gene is recJ [H]

Identifier: 189025929

GI number: 189025929

Start: 770018

End: 772138

Strand: Reverse

Name: recJ [H]

Synonym: TPASS_0704

Alternate gene names: 189025929

Gene position: 772138-770018 (Counterclockwise)

Preceding gene: 189025930

Following gene: 189025928

Centisome position: 67.76

GC content: 53.23

Gene sequence:

>2121_bases
ATGAAACGGTGGCGTGCAAAGGCACTTGACGAAGGGCGTGTCCGCGAGCTTACCGCGCGGTATAGCTGCTCGGCGCTTGA
GGCGGCCATCCTTGTGCGTCGCAAGGTAGTGGATGCTGACGCACTCCTTTTTCATTTTGAGCGTGATCTACGCTATCTGC
CAGGACCGTTCCGTTTCCATGCGATGAGCGCTGCAGTTGACCGTTTGCGTCTTGCGCATGAGCGGAAAGAAAAGGTGCTC
ATCTTTGGTGATCGTGATGCAGACGGTATTAGCGCCACCACCCTTCTTTTTGAGGCTCTCTGTGCATTTGGCTTGACGGT
GTGCTGGCGCGTGCCGGTTGCCGATGAGCCCTATGGGCTCTCGTGCAATGCAGTAGATGAGCATGCGGCCGCAGGGGGTA
CTCTCATTGTGACCGTTGACTGCGGTATTTCTAATCGCGCAGAAATTGCGTATGCGCGTCACAGAGGTATTGACGTACTG
GTTATTGATCACCATGCGGCCCCTGAGACACTCCCTGATGCAATTATCATTAATGCAAAAGTGCCAGGTGCAGGGTATCC
GCACGAGTTTCTCTCAGGCTGTGCAACTGCGTGGAAGGTGGTAACGGCGCTCCGTTTCAGTACCAGCGGCTGGTATCAGC
GGCCTGTGGTGCTTCTACACGTTCGTCCGGTGACTGGGGCGTATACGATTGAGGCTGTAAAAATGTGTAATATGGAGGTG
GTGGACCGTCTTTCGGAAACGGTGGTCCCACGTATGCTCCTGCCATCTCATACGCGTCTTGGTGCCTTCCTGGAGGGTCA
GGAAGTTTTCGTATGGGATGAGCAGGTGGTGCGCACGCAGTTGGCCAAAGTGTTTGGTGGAGAGTTTCCCTGGCGTTTTA
CCGATGTGCGGCCGCGTATGGCCGCGTTTTTTCCCCAATGTGAACGCGCAAGCCTTTTAAGGATGAAGGACTTTTCTCGC
ATTGGGCGTGCGCGCTCAAAACCGATGGAGGAAATCGAAAGCTTTATCAATCTTTTTATAACTTTTGTGCAGAAAGATAC
CCAGCTCTACCGGGGCGCGGCGGATGAATTGCAGCTTGTGGCAATTTCTACGCTTTCTGATCTTATGGTGTTGGCGGGGG
AGAACCGTATTATGGTCCGCTACGGTCTGCAGGCGATGAATGAGGCGCCACGTGTGGGTTTGCGTGAGTTGTTTGCGATA
CAGCGTCTCATGGGGAAGAAGTTAGGAACCGTAGAGGTAGGGTGGAGTATTGTGCCGCTTATCAATGCAACGGGGCGGTT
AGGGTGTCCGCACCGTGCAGTGGAACTGTTTTTAATGCGCGAAGCTTCGCAGCGCGCGCTGCAGGCACGAAAAATGGTGC
AATTGAACGAACAGCGAAAAAAGTTAGGAAGGAGTGCTCGTGCACTTGTTGAGCCTCTTGCGCGTGCAAGTCTTGAGACG
TACAGCAACCGCCTGGCAGTGGTTTGTAGCGATAAGATTCATCGGGGCGTTACGGGGATTCTTGCAAACTGTTTGAGCGA
GGCGCTGCGCGTGCCTTGTGTGATCATTTGTATAATGGCAGACGGGCACGCGGTAGGATCGTTGCGTTCGGCGCGGGGAT
ATCACCTATTTTCGCTCTTAGATCCCCTTGCAGACTTGTTCTCTGACTATGGGGGGCATGCATTTGCGGCGGGTTTTTCA
ATTCCCTCTGAGCGAATTCCCCAGCTATTGCACCGTATGGAACTGTATGCGGCAACCATTGAGTTTGCTGATGAAAGCGC
GCAAGAGTGTGGAGAATTTGATGCAGAACTGGATGCTACGCAGATGACGCGGGGGCTTTTGACCCTTGTCGATCGCTTTG
AGCCGTACGGAGAAGGCAATCCCCCGTTGTGCTTTTTGGCGAAGAGATTGAAAATTTTTTCTGCATCGCTTTTTGGGCGT
ACAGAACGTGTGCACGTAAAATTGACCTTGGATGCACAGGTGCATAAATGGCCCGCAATTTACTGGGGAGCAGGGGAAAA
GTTGGCACAGGAGTTTGCAGTGGGGGATGTAGTTGACGCGGTTTTTCAAGTGACGCGTAACACGTTTCAGGGAACGTGCA
CACCGCAGCTGGTCATTCAAGATTTGTGGAGGAGTGAGTGA

Upstream 100 bases:

>100_bases
CGGAAAGCGTCGCGGCACGCGGGGCGCGTGTGTGGTGCGTGTGGCCGTTCTGGCGGGTCCTCTTGCGTCGGGTGGTACTC
TCTCGGAGGAAGGGCTACGC

Downstream 100 bases:

>100_bases
TGGGTGCAGAGAGAGTAGGACGCGCACCGGGGGTGAACGCTAAAAGGGCAGTGCAGACGCAGGGCGTGCAGTCACCGTCG
GTGAAAAGAAGTGTTCGTTG

Product: single-stranded-DNA-specific exonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFHAMSAAVDRLRLAHERKEKVL
IFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGLSCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVL
VIDHHAAPETLPDAIIINAKVPGAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEV
VDRLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRMAAFFPQCERASLLRMKDFSR
IGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLVAISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAI
QRLMGKKLGTVEVGWSIVPLINATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLET
YSNRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLLDPLADLFSDYGGHAFAAGFS
IPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDATQMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGR
TERVHVKLTLDAQVHKWPAIYWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE

Sequences:

>Translated_706_residues
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFHAMSAAVDRLRLAHERKEKVL
IFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGLSCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVL
VIDHHAAPETLPDAIIINAKVPGAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEV
VDRLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRMAAFFPQCERASLLRMKDFSR
IGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLVAISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAI
QRLMGKKLGTVEVGWSIVPLINATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLET
YSNRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLLDPLADLFSDYGGHAFAAGFS
IPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDATQMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGR
TERVHVKLTLDAQVHKWPAIYWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE
>Mature_706_residues
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFHAMSAAVDRLRLAHERKEKVL
IFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGLSCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVL
VIDHHAAPETLPDAIIINAKVPGAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEV
VDRLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRMAAFFPQCERASLLRMKDFSR
IGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLVAISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAI
QRLMGKKLGTVEVGWSIVPLINATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLET
YSNRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLLDPLADLFSDYGGHAFAAGFS
IPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDATQMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGR
TERVHVKLTLDAQVHKWPAIYWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=364, Percent_Identity=28.2967032967033, Blast_Score=101, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 78763; Mature: 78763

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS00606 B_KETOACYL_SYNTHASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
AMSAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGL
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
SCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVLVIDHHAAPETLPDAIIINAK
CCCCCHHHHCCCCEEEEEEECCCCCCHHEEEHHHCCCEEEEEECCCCCCCCCCEEEEEEE
VPGAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCHHH
VDRLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRM
HHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHCCCCCEEECCCCHHH
AAFFPQCERASLLRMKDFSRIGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
AISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAIQRLMGKKLGTVEVGWSIVPL
EHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEECCEEEEE
INATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLET
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSNRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLL
HCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHCHHHCCCCHHHHHH
DPLADLFSDYGGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDAT
HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
QMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTLDAQVHKWPAI
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEECCCCEE
YWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDLRYLPGPFRFH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
AMSAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEALCAFGLTVCWRVPVADEPYGL
HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
SCNAVDEHAAAGGTLIVTVDCGISNRAEIAYARHRGIDVLVIDHHAAPETLPDAIIINAK
CCCCCHHHHCCCCEEEEEEECCCCCCHHEEEHHHCCCEEEEEECCCCCCCCCCEEEEEEE
VPGAGYPHEFLSGCATAWKVVTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCHHH
VDRLSETVVPRMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRM
HHHHHHHHHHHHHCCCCCCCCEEECCCEEEEECHHHHHHHHHHHHCCCCCEEECCCCHHH
AAFFPQCERASLLRMKDFSRIGRARSKPMEEIESFINLFITFVQKDTQLYRGAADELQLV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
AISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAIQRLMGKKLGTVEVGWSIVPL
EHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEECCEEEEE
INATGRLGCPHRAVELFLMREASQRALQARKMVQLNEQRKKLGRSARALVEPLARASLET
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YSNRLAVVCSDKIHRGVTGILANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLL
HCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHCHHHCCCCHHHHHH
DPLADLFSDYGGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDAT
HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
QMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTLDAQVHKWPAI
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEECCCCEE
YWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQDLWRSE
EECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]