| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025893
Identifier: 189025893
GI number: 189025893
Start: 731457
End: 732059
Strand: Reverse
Name: 189025893
Synonym: TPASS_0668
Alternate gene names: NA
Gene position: 732059-731457 (Counterclockwise)
Preceding gene: 189025894
Following gene: 189025892
Centisome position: 64.25
GC content: 44.61
Gene sequence:
>603_bases ATGAGTTCTGTTCTATCTACACTCTCGGCATTATTGTCAGTGTATGCGCTCCTGTGTACGGCACGCGTATTTCTCTCGTG GGTGCCCCATCTTTCACATTCACCCCTGGGGGAATTCTTATCTGCGATATGTGAGCCGTACCTGTCCTGGTTTAGGAGAT TTTCGTTTATGCGTGTTGGTACGGTGGACTTTTCTCCCATGATTGCGATTGGGGTGCTCACCATACTCTCAAACACTGTC GGAACTATTTTCCTTGTCGGTTCGGTTTCTGTGTTAAAGTTACTGCTGCAAATGCTGATGCTGTTGCTGTGGTCGTTGTG CAAGTTTGTGTTGGAGTTTTTATTGATTCTTTTTGCTGTTCGATTTGTTTCCGATCGTATGAATGTAAATGTTCATACGT TATTTTTTGTGATGATGGATAGGATATTAAATCCGGTACGTGTTGCGTTGACCGCTCCGTTTAAGTTCCTTGATTTGAGT TACCGTGCGTCCTTGCTCTTGTGTGTTCTTGTGATATTGTGCGCGCGGGTTCTTGGAGGTTTTTTTGTGAATGTAGTGGT GCGGTACTTTTTGACTGGAACACTGCACGTGGCAGTGATGTAA
Upstream 100 bases:
>100_bases TGGTGTACGTTCCTTCGTGTAAGGTATCTGCCACTGAGGTATTTGCGCAGCAATTAAAAGGTAATGAGAGTTTTGTCCAA ATTCTAAAGGAGTGCGTGCA
Downstream 100 bases:
>100_bases TCCGTCGCTTTGAGACAAAGGACTGATATCCCTATTCACTGTAGGCAGTGTTATTCGTCGAAATATGTATTGCCTGAAGA AATTATTCGGGACGGAGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MSSVLSTLSALLSVYALLCTARVFLSWVPHLSHSPLGEFLSAICEPYLSWFRRFSFMRVGTVDFSPMIAIGVLTILSNTV GTIFLVGSVSVLKLLLQMLMLLLWSLCKFVLEFLLILFAVRFVSDRMNVNVHTLFFVMMDRILNPVRVALTAPFKFLDLS YRASLLLCVLVILCARVLGGFFVNVVVRYFLTGTLHVAVM
Sequences:
>Translated_200_residues MSSVLSTLSALLSVYALLCTARVFLSWVPHLSHSPLGEFLSAICEPYLSWFRRFSFMRVGTVDFSPMIAIGVLTILSNTV GTIFLVGSVSVLKLLLQMLMLLLWSLCKFVLEFLLILFAVRFVSDRMNVNVHTLFFVMMDRILNPVRVALTAPFKFLDLS YRASLLLCVLVILCARVLGGFFVNVVVRYFLTGTLHVAVM >Mature_199_residues SSVLSTLSALLSVYALLCTARVFLSWVPHLSHSPLGEFLSAICEPYLSWFRRFSFMRVGTVDFSPMIAIGVLTILSNTVG TIFLVGSVSVLKLLLQMLMLLLWSLCKFVLEFLLILFAVRFVSDRMNVNVHTLFFVMMDRILNPVRVALTAPFKFLDLSY RASLLLCVLVILCARVLGGFFVNVVVRYFLTGTLHVAVM
Specific function: Unknown
COG id: COG0762
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22467; Mature: 22336
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVLSTLSALLSVYALLCTARVFLSWVPHLSHSPLGEFLSAICEPYLSWFRRFSFMRVG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC TVDFSPMIAIGVLTILSNTVGTIFLVGSVSVLKLLLQMLMLLLWSLCKFVLEFLLILFAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFVSDRMNVNVHTLFFVMMDRILNPVRVALTAPFKFLDLSYRASLLLCVLVILCARVLGG HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FFVNVVVRYFLTGTLHVAVM HHHHHHHHHHHHHHHHHEEC >Mature Secondary Structure SSVLSTLSALLSVYALLCTARVFLSWVPHLSHSPLGEFLSAICEPYLSWFRRFSFMRVG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC TVDFSPMIAIGVLTILSNTVGTIFLVGSVSVLKLLLQMLMLLLWSLCKFVLEFLLILFAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFVSDRMNVNVHTLFFVMMDRILNPVRVALTAPFKFLDLSYRASLLLCVLVILCARVLGG HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH FFVNVVVRYFLTGTLHVAVM HHHHHHHHHHHHHHHHHEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA