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The map label for this gene is ybeY [C]

Identifier: 189025875

GI number: 189025875

Start: 714091

End: 714573

Strand: Reverse

Name: ybeY [C]

Synonym: TPASS_0650

Alternate gene names: 189025875

Gene position: 714573-714091 (Counterclockwise)

Preceding gene: 189025876

Following gene: 189025874

Centisome position: 62.71

GC content: 49.69

Gene sequence:

>483_bases
ATGTCCGAGGTGAATAAAGTTTCTGTTTCCTGCGAAGGCTTTTGTCCGCCTCCTTGGATTGGTCAAGTTGCGCCGTTTGT
GTGTGCGGTGCTCGATTCCCAGGCTATTTCCCACTGGGATCTTTCCATTGTCTGCTGCACTGATGCGTTTATTCGCCGGC
TAAATTACGATTACCGTGGTATTGATTCTCCCACTGACGTGCTGTCTTTTGAGAACGATGGTGAGTATTGCGATGACGCA
GGGACGCGTTTTTTTCTTGCTGGTGATATTATCATCAGTCTTGAAAGTGTGCGTGAAAACAGTGAACGTTTTCACGTTGC
CGCGCACGAGGAATTTAAACGGGTGCTCATCCACGGCATTTTGCATCTGAGCGGTATGGATCACCAGGACAATTCTCCCG
GTCAAGAGATGTTGCGTTTGCAGGAGCGCATACTGGCGCAGCACTGTCGGGTGCTATCATCGGGTATACCATGGGAGTCA
TAG

Upstream 100 bases:

>100_bases
CAGGATACTACCATTCCCGCATAGAGTATCCTCACCAAAGAGATTCTGATCAGCAGCAGCTCGTGTCCGTAGCCCAAGGA
TCGTATAAGGAGTAATCTTT

Downstream 100 bases:

>100_bases
ACTGGTTGAGGCGCAGGCACGCTGTTACCCATATTTTTCAGCAACCGCTGAATGAAGAAAAGCAGGATATGATCCGCGGT
ATAGTGGATCTTTCTGACAC

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSEVNKVSVSCEGFCPPPWIGQVAPFVCAVLDSQAISHWDLSIVCCTDAFIRRLNYDYRGIDSPTDVLSFENDGEYCDDA
GTRFFLAGDIIISLESVRENSERFHVAAHEEFKRVLIHGILHLSGMDHQDNSPGQEMLRLQERILAQHCRVLSSGIPWES

Sequences:

>Translated_160_residues
MSEVNKVSVSCEGFCPPPWIGQVAPFVCAVLDSQAISHWDLSIVCCTDAFIRRLNYDYRGIDSPTDVLSFENDGEYCDDA
GTRFFLAGDIIISLESVRENSERFHVAAHEEFKRVLIHGILHLSGMDHQDNSPGQEMLRLQERILAQHCRVLSSGIPWES
>Mature_159_residues
SEVNKVSVSCEGFCPPPWIGQVAPFVCAVLDSQAISHWDLSIVCCTDAFIRRLNYDYRGIDSPTDVLSFENDGEYCDDAG
TRFFLAGDIIISLESVRENSERFHVAAHEEFKRVLIHGILHLSGMDHQDNSPGQEMLRLQERILAQHCRVLSSGIPWES

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_TREPA (O83656)

Other databases:

- EMBL:   AE000520
- PIR:   A71300
- RefSeq:   NP_219087.1
- ProteinModelPortal:   O83656
- IntAct:   O83656
- GeneID:   2611773
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0650
- NMPDR:   fig|243276.1.peg.646
- TIGR:   TP_0650
- HOGENOM:   HBG352936
- OMA:   ELQRNTI
- ProtClustDB:   PRK00016
- BioCyc:   TPAL243276:TP_0650-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18012; Mature: 17881

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEVNKVSVSCEGFCPPPWIGQVAPFVCAVLDSQAISHWDLSIVCCTDAFIRRLNYDYRG
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCC
IDSPTDVLSFENDGEYCDDAGTRFFLAGDIIISLESVRENSERFHVAAHEEFKRVLIHGI
CCCCHHHEEECCCCCCCCCCCCEEEEECHHEEEHHHHHCCCHHEEEHHHHHHHHHHHHHH
LHLSGMDHQDNSPGQEMLRLQERILAQHCRVLSSGIPWES
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SEVNKVSVSCEGFCPPPWIGQVAPFVCAVLDSQAISHWDLSIVCCTDAFIRRLNYDYRG
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHCCCCCC
IDSPTDVLSFENDGEYCDDAGTRFFLAGDIIISLESVRENSERFHVAAHEEFKRVLIHGI
CCCCHHHEEECCCCCCCCCCCCEEEEECHHEEEHHHHHCCCHHEEEHHHHHHHHHHHHHH
LHLSGMDHQDNSPGQEMLRLQERILAQHCRVLSSGIPWES
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876