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The map label for this gene is oppA [H]

Identifier: 189025812

GI number: 189025812

Start: 636698

End: 638341

Strand: Direct

Name: oppA [H]

Synonym: TPASS_0585

Alternate gene names: 189025812

Gene position: 636698-638341 (Clockwise)

Preceding gene: 189025811

Following gene: 189025813

Centisome position: 55.88

GC content: 54.5

Gene sequence:

>1644_bases
GTGCGTAGAATGCGGCTCTCGCGCCGCGGCATTCTCACGGTAGTAGGTACCCTTCTTCTCCTACCTCTCTTTCCTTCCGA
AAAAAAAAAGACTCACGCGCCGCTCCCTCGATCTGAAAGAAAAGAGTTTGTGGTGTCCTTTTCTCCGTATAGGCCTGTGC
TACACCCGCACGTGGCATCGCGCGTGGACGAAGCACAGCTGCTCACAGCCCTATATGAGGGACTTGTCACCTATGATCCG
TACGATCTCCACCCAATCCCGGCGCTCGCACAACACTGGTCGGTAAGCACCGATGGGTTGACGTGGACGTTCTATTTACG
AGATCAGATTTTCTTTCAAAACGGCGACCCTATCACTGCAGAGACGTTCCAGCAATCCTGGCTCAATTTGTTAAATCCTG
AATGGAATGTGCCGTATGCGTCTTTTTTGGATGCAGTTGAGGGGGCACGTGCGTACCGCAGCGGCACTACGGCTGACTCT
CACACGGTTGGGATTCTCGTAGAGGGGTCAGACAAAAAGACACTCGTGGTCAAGCTCGCGTACCCAGCAGGACACTTCAT
TCAGATGCTCTGTCACCACGCATTTGCCGCAGTCCACCCCACCCAACTGGCAAGCGTCGGCACGCTGCACGCGCGTACGG
CAAGCGCCTCAGCACACAAGCCGTTCCATCCTATCGCAAGCGGTCCTTTTGAATTACAACAAATGCAAGCAGATCGCGTG
GTGTTGCGTGTTAACACCCGCTACTGGGACAGGGACGCGCTTGCCCTCCACGCCATCGTGGCGCTCATTGCACAAGACCC
TGCAGCGCGCGATGCGGGGTTTAACGATGGGAGCATCCATTGGATTAGTGGAGCGCTGGAGCACAGTTCTTTGCAGGATG
CAGCTACACTTCAGATCGTACCGCTTCTGGCAACAGAGTATCTGTGTTTTAAAACGGCACATGAGCCGACGTGCAACGCC
ACGCTGCGCAAGGCACTGCTTTTAGCTACTCCGGTGGAGGAGCTTACCGCGCGCTATTTATTTCCCGCACGAACGCTCGT
AACTCCGTTTACCGGCTACCCGGTACCGCCTGTAGTACATGAATACAATCCTGCGCGCGCACGCGCGCTTTTAGCAGAAG
CGAAGATAGGTGGGAAGACAGCCCGTACTCCTCTTAAAATTCTCGTTTCCGACACCGAGGCGTGCCGGGCACTCGCACTT
GAACTTCAGAAGGCCTGGACAGCCCTCGCACTTGCAGTGGAAATCTGGGCAGTGCGGCCTGAAACGTACCGGGAATATGT
GCAGGATGAAAAATACCACGTGAGAATCGTGTCTTGGGTTGCGGACTTTGCAGATCCGATGGCGTTTCTGGAGCTGTTTA
GAAAGGGATCAAAGACACACTCAACCGGATGGACCCATGAGGAATTTGAGGCACTGCTGACACGCGCAGGAGCAGAACCG
CACGTGCTTCGTCGTTGGGAACTTCTTGCGCAGGCAGAACGTATCCTCTTACAGGAAGCAGTTGTGCTTCCGCTTTCGCG
TTTGCATGCACTGCACGCGGTACAGCGGCGCACGGTGCGCGGCTGGTATGCAAATGTGCTCGATGTGCATCCATTTAAGT
TTATCTCGTTACAAGAAGAAATAAAGGTCAACCTAGACTCATAG

Upstream 100 bases:

>100_bases
ACAACTATCACCACTTCTGTAACCAAGGCAAATAAGTGCCGCGCAGAATATGCCTCGCAACTAGAGGAGCAAAAACATAT
GAAGCGTTTAGGGGTAGCCC

Downstream 100 bases:

>100_bases
AGGGGCTGCAACCCGTGCACACCCAGGTGTACCTTGCAACGTAGATGTACCGGCGTGTACAATGCCCTCTGCATACACAG
AGGGGATTATGGGGTATCCG

Product: oligopeptide ABC transporter, periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 547

Protein sequence:

>547_residues
MRRMRLSRRGILTVVGTLLLLPLFPSEKKKTHAPLPRSERKEFVVSFSPYRPVLHPHVASRVDEAQLLTALYEGLVTYDP
YDLHPIPALAQHWSVSTDGLTWTFYLRDQIFFQNGDPITAETFQQSWLNLLNPEWNVPYASFLDAVEGARAYRSGTTADS
HTVGILVEGSDKKTLVVKLAYPAGHFIQMLCHHAFAAVHPTQLASVGTLHARTASASAHKPFHPIASGPFELQQMQADRV
VLRVNTRYWDRDALALHAIVALIAQDPAARDAGFNDGSIHWISGALEHSSLQDAATLQIVPLLATEYLCFKTAHEPTCNA
TLRKALLLATPVEELTARYLFPARTLVTPFTGYPVPPVVHEYNPARARALLAEAKIGGKTARTPLKILVSDTEACRALAL
ELQKAWTALALAVEIWAVRPETYREYVQDEKYHVRIVSWVADFADPMAFLELFRKGSKTHSTGWTHEEFEALLTRAGAEP
HVLRRWELLAQAERILLQEAVVLPLSRLHALHAVQRRTVRGWYANVLDVHPFKFISLQEEIKVNLDS

Sequences:

>Translated_547_residues
MRRMRLSRRGILTVVGTLLLLPLFPSEKKKTHAPLPRSERKEFVVSFSPYRPVLHPHVASRVDEAQLLTALYEGLVTYDP
YDLHPIPALAQHWSVSTDGLTWTFYLRDQIFFQNGDPITAETFQQSWLNLLNPEWNVPYASFLDAVEGARAYRSGTTADS
HTVGILVEGSDKKTLVVKLAYPAGHFIQMLCHHAFAAVHPTQLASVGTLHARTASASAHKPFHPIASGPFELQQMQADRV
VLRVNTRYWDRDALALHAIVALIAQDPAARDAGFNDGSIHWISGALEHSSLQDAATLQIVPLLATEYLCFKTAHEPTCNA
TLRKALLLATPVEELTARYLFPARTLVTPFTGYPVPPVVHEYNPARARALLAEAKIGGKTARTPLKILVSDTEACRALAL
ELQKAWTALALAVEIWAVRPETYREYVQDEKYHVRIVSWVADFADPMAFLELFRKGSKTHSTGWTHEEFEALLTRAGAEP
HVLRRWELLAQAERILLQEAVVLPLSRLHALHAVQRRTVRGWYANVLDVHPFKFISLQEEIKVNLDS
>Mature_547_residues
MRRMRLSRRGILTVVGTLLLLPLFPSEKKKTHAPLPRSERKEFVVSFSPYRPVLHPHVASRVDEAQLLTALYEGLVTYDP
YDLHPIPALAQHWSVSTDGLTWTFYLRDQIFFQNGDPITAETFQQSWLNLLNPEWNVPYASFLDAVEGARAYRSGTTADS
HTVGILVEGSDKKTLVVKLAYPAGHFIQMLCHHAFAAVHPTQLASVGTLHARTASASAHKPFHPIASGPFELQQMQADRV
VLRVNTRYWDRDALALHAIVALIAQDPAARDAGFNDGSIHWISGALEHSSLQDAATLQIVPLLATEYLCFKTAHEPTCNA
TLRKALLLATPVEELTARYLFPARTLVTPFTGYPVPPVVHEYNPARARALLAEAKIGGKTARTPLKILVSDTEACRALAL
ELQKAWTALALAVEIWAVRPETYREYVQDEKYHVRIVSWVADFADPMAFLELFRKGSKTHSTGWTHEEFEALLTRAGAEP
HVLRRWELLAQAERILLQEAVVLPLSRLHALHAVQRRTVRGWYANVLDVHPFKFISLQEEIKVNLDS

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the binding of dipeptides with high affinity. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=489, Percent_Identity=25.9713701431493, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1789397, Length=515, Percent_Identity=25.2427184466019, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787495, Length=521, Percent_Identity=22.6487523992322, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789966, Length=500, Percent_Identity=24.2, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787551, Length=541, Percent_Identity=25.5083179297597, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1787762, Length=453, Percent_Identity=23.3995584988962, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1789887, Length=468, Percent_Identity=24.7863247863248, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787052, Length=343, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61378; Mature: 61378

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRMRLSRRGILTVVGTLLLLPLFPSEKKKTHAPLPRSERKEFVVSFSPYRPVLHPHVAS
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHH
RVDEAQLLTALYEGLVTYDPYDLHPIPALAQHWSVSTDGLTWTFYLRDQIFFQNGDPITA
HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCH
ETFQQSWLNLLNPEWNVPYASFLDAVEGARAYRSGTTADSHTVGILVEGSDKKTLVVKLA
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEE
YPAGHFIQMLCHHAFAAVHPTQLASVGTLHARTASASAHKPFHPIASGPFELQQMQADRV
CCCHHHHHHHHHHHHHHCCHHHHHHCCCHHEECCCCCCCCCCCCCCCCCHHHHHHCCCEE
VLRVNTRYWDRDALALHAIVALIAQDPAARDAGFNDGSIHWISGALEHSSLQDAATLQIV
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCCHHEEEH
PLLATEYLCFKTAHEPTCNATLRKALLLATPVEELTARYLFPARTLVTPFTGYPVPPVVH
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCC
EYNPARARALLAEAKIGGKTARTPLKILVSDTEACRALALELQKAWTALALAVEIWAVRP
CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ETYREYVQDEKYHVRIVSWVADFADPMAFLELFRKGSKTHSTGWTHEEFEALLTRAGAEP
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
HVLRRWELLAQAERILLQEAVVLPLSRLHALHAVQRRTVRGWYANVLDVHPFKFISLQEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHH
IKVNLDS
EEEECCC
>Mature Secondary Structure
MRRMRLSRRGILTVVGTLLLLPLFPSEKKKTHAPLPRSERKEFVVSFSPYRPVLHPHVAS
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHH
RVDEAQLLTALYEGLVTYDPYDLHPIPALAQHWSVSTDGLTWTFYLRDQIFFQNGDPITA
HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCH
ETFQQSWLNLLNPEWNVPYASFLDAVEGARAYRSGTTADSHTVGILVEGSDKKTLVVKLA
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEE
YPAGHFIQMLCHHAFAAVHPTQLASVGTLHARTASASAHKPFHPIASGPFELQQMQADRV
CCCHHHHHHHHHHHHHHCCHHHHHHCCCHHEECCCCCCCCCCCCCCCCCHHHHHHCCCEE
VLRVNTRYWDRDALALHAIVALIAQDPAARDAGFNDGSIHWISGALEHSSLQDAATLQIV
EEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCCCCCHHEEEH
PLLATEYLCFKTAHEPTCNATLRKALLLATPVEELTARYLFPARTLVTPFTGYPVPPVVH
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCC
EYNPARARALLAEAKIGGKTARTPLKILVSDTEACRALALELQKAWTALALAVEIWAVRP
CCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
ETYREYVQDEKYHVRIVSWVADFADPMAFLELFRKGSKTHSTGWTHEEFEALLTRAGAEP
HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
HVLRRWELLAQAERILLQEAVVLPLSRLHALHAVQRRTVRGWYANVLDVHPFKFISLQEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHH
IKVNLDS
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]