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The map label for this gene is carD [H]

Identifier: 189025741

GI number: 189025741

Start: 548433

End: 549059

Strand: Direct

Name: carD [H]

Synonym: TPASS_0511

Alternate gene names: 189025741

Gene position: 548433-549059 (Clockwise)

Preceding gene: 189025739

Following gene: 189025742

Centisome position: 48.13

GC content: 49.76

Gene sequence:

>627_bases
ATGGCTACTCGGGCGTGGTGGAGTTCCCTCGTTTTTCCCCTTCCTCTTCCCACTGACTTTTTTCCGTGTTTGTGCTACGC
TGGCCCCATGGGTAAGGCGTGTGCGTTTCGTCCCCACGATCACGTGGTGTATCCAGGACAGGGCGTCGGTCAGGTGCAGG
AAATAAGCGAAAAAACATTTAAGAACGAGACGCTGCTATACTACGTCATTTACTTGGAAGAGTCAGATATGACGGTGCTT
ATTCCGGTGGATAAAGCACAGGAACTGGGTATTAGAACCATTGTCAAAAGGAAGGAAGCAGAGCGCGCGTTGAGGTTTCT
GTCTGAGGATTTTGATCCTAGTCCTCTTGATTGGAAAATGCGTTATCAGGTCAATTTAAACCTTTTTAAAAGTGGTGGTA
TCTTGGACAATGCGGCCGTTGTGCGCTCGCTCTACCACCGGAGTAAAGTCAAGGAACTGCCTATCCAGGAGCGAAGGCTC
TATGATTCTGCATACCGTATTTTTCAGGATGAGATGTGTTTTGCGCTGGGGCTGCGACCCCCTGAGGTTGAAACGCTCAT
CCATGGCTATTTGGAAAAGGCAAAGGAAAACCCAGTTGTGTCGGGTACGGTGGATGTGCCCGGGTGA

Upstream 100 bases:

>100_bases
CAATGTGCGCGACAATACAGAAATTTCGCACTCGGCGCACGCAAGCCATGGCGCGCATAGTAGTACAAAAGGGTGCGCCA
GTCTACACGTTCTTTGTGTT

Downstream 100 bases:

>100_bases
CCCGCGCCGCGTTGCTTGTCACCGCTGCAGGCAGCTCTGCACGCATGCGCAGAGGTGGTGCGTGTGTGCAGAAAAAGGAG
TACTTGCCGTTAACTTCCAG

Product: transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MATRAWWSSLVFPLPLPTDFFPCLCYAGPMGKACAFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVL
IPVDKAQELGIRTIVKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPIQERRL
YDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENPVVSGTVDVPG

Sequences:

>Translated_208_residues
MATRAWWSSLVFPLPLPTDFFPCLCYAGPMGKACAFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVL
IPVDKAQELGIRTIVKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPIQERRL
YDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENPVVSGTVDVPG
>Mature_207_residues
ATRAWWSSLVFPLPLPTDFFPCLCYAGPMGKACAFRPHDHVVYPGQGVGQVQEISEKTFKNETLLYYVIYLEESDMTVLI
PVDKAQELGIRTIVKRKEAERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPIQERRLY
DSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENPVVSGTVDVPG

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 23790; Mature: 23659

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00022 EGF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRAWWSSLVFPLPLPTDFFPCLCYAGPMGKACAFRPHDHVVYPGQGVGQVQEISEKTF
CCCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHH
KNETLLYYVIYLEESDMTVLIPVDKAQELGIRTIVKRKEAERALRFLSEDFDPSPLDWKM
CCCEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
RYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPIQERRLYDSAYRIFQDEMCFALGLRP
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PEVETLIHGYLEKAKENPVVSGTVDVPG
CHHHHHHHHHHHHHHCCCCEEEEECCCC
>Mature Secondary Structure 
ATRAWWSSLVFPLPLPTDFFPCLCYAGPMGKACAFRPHDHVVYPGQGVGQVQEISEKTF
CCHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHH
KNETLLYYVIYLEESDMTVLIPVDKAQELGIRTIVKRKEAERALRFLSEDFDPSPLDWKM
CCCEEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
RYQVNLNLFKSGGILDNAAVVRSLYHRSKVKELPIQERRLYDSAYRIFQDEMCFALGLRP
EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PEVETLIHGYLEKAKENPVVSGTVDVPG
CHHHHHHHHHHHHHHCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]