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The map label for this gene is yebC [C]

Identifier: 189025705

GI number: 189025705

Start: 503968

End: 504705

Strand: Reverse

Name: yebC [C]

Synonym: TPASS_0474

Alternate gene names: 189025705

Gene position: 504705-503968 (Counterclockwise)

Preceding gene: 189025706

Following gene: 189025704

Centisome position: 44.29

GC content: 52.17

Gene sequence:

>738_bases
ATGTCTGGACATAGTAAATGGGCCACTATCAAGCATGCTAAGGGAGCTGCGGACGCAAAGCGTGGGCAGTTGTTCACTAA
GTTTATCAAGGAAATATCTGTTGCTGCCCGCATGGCAGGCGGTGACCCACAGGCTAATCCACGTCTGAGGACTGCAATCC
TTAAGGCACGTGCCGCTAATATGCCTAAAGATAACATTGAGCGGGCTATTAAGAAGGGTACGGGGGAGTTATCTGGCAGT
AGCTATGAGGAGCTCGTTTATGAAGGTTATGCGCCGGGCGGTGTTGCCGTTCTGGTCGAGGTGCTCACCGATAACAAAAA
CCGCGCGGCCGCGAACGTGCGCAATTTGTTTTCCCGTAATGGGGGTAATTTAGGTTCGGCAGGATCCGTTTCCTATATGT
TCAATCGCAAAGGAGTTATAGAGTACGATTCCGAACAGGTTGACGAAGAGGCTCTCATGGAGCTTGCCCTCGAAGCGGGT
GCTGAGGACATACAGAACGCCGGTGGTGTCCTCACCGTCACCACGGTTCCCGGTACGTTTGAGACGGTCCTAGAATCCCT
TCAGGCCAAGGGGTGGGAATCACTATCTGCCGGTATATCTATGGTTCCCGACACGTACCTGGCGCTTGATGAGGAGACTG
CGCGTAAGGTATTGAAGATGATTGACCGGCTCGAAGAAGAAGAGGATGTTCAGGCCGTCTACAGTAACGCTGATATTCCA
AGCGAGCTTGTGCTGTAA

Upstream 100 bases:

>100_bases
CAATATGCGCCAGCGGGACTTGGAGAAAAGCGCACACCGTGCTAGCATCAGGCGCCCGCGTTCCGGTACGTACATTTTCG
GGCATTAGGGGAAAGATCTC

Downstream 100 bases:

>100_bases
AGCGGCGCACTTTTGATGGGCGAACGCATACCCGCGGTGATCTTTCGCCGTATGCGGTGCCCCGTTGGTTACGGTATCGA
TAGTGGAAATATTTCTCATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAANMPKDNIERAIKKGTGELSGS
SYEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSRNGGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMELALEAG
AEDIQNAGGVLTVTTVPGTFETVLESLQAKGWESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSNADIP
SELVL

Sequences:

>Translated_245_residues
MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAANMPKDNIERAIKKGTGELSGS
SYEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSRNGGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMELALEAG
AEDIQNAGGVLTVTTVPGTFETVLESLQAKGWESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSNADIP
SELVL
>Mature_244_residues
SGHSKWATIKHAKGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAANMPKDNIERAIKKGTGELSGSS
YEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSRNGGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMELALEAGA
EDIQNAGGVLTVTTVPGTFETVLESLQAKGWESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSNADIPS
ELVL

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=245, Percent_Identity=31.0204081632653, Blast_Score=134, Evalue=5e-32,
Organism=Escherichia coli, GI1788171, Length=244, Percent_Identity=49.1803278688525, Blast_Score=246, Evalue=8e-67,
Organism=Escherichia coli, GI1788294, Length=234, Percent_Identity=35.4700854700855, Blast_Score=140, Evalue=9e-35,
Organism=Caenorhabditis elegans, GI17556100, Length=243, Percent_Identity=25.1028806584362, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321458, Length=264, Percent_Identity=34.0909090909091, Blast_Score=124, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24583305, Length=249, Percent_Identity=26.1044176706827, Blast_Score=79, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y474_TREPA (O83487)

Other databases:

- EMBL:   AE000520
- PIR:   H71318
- RefSeq:   NP_218915.1
- ProteinModelPortal:   O83487
- SMR:   O83487
- IntAct:   O83487
- GeneID:   2611114
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0474
- NMPDR:   fig|243276.1.peg.474
- TIGR:   TP_0474
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- ProtClustDB:   PRK00110
- BioCyc:   TPAL243276:TP_0474-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26326; Mature: 26195

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWATIKHAKGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAAN
CCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
MPKDNIERAIKKGTGELSGSSYEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSRN
CCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
GGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMELALEAGAEDIQNAGGVLTVTTVPGTF
CCCCCCCCCEEEEECCCCCEECCHHHCCHHHHHHHHHHHCHHHHHHCCCEEEEEECCCCH
ETVLESLQAKGWESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSNADIP
HHHHHHHHHCCHHHHHCCCHHCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
SELVL
HHHCC
>Mature Secondary Structure 
SGHSKWATIKHAKGAADAKRGQLFTKFIKEISVAARMAGGDPQANPRLRTAILKARAAN
CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
MPKDNIERAIKKGTGELSGSSYEELVYEGYAPGGVAVLVEVLTDNKNRAAANVRNLFSRN
CCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
GGNLGSAGSVSYMFNRKGVIEYDSEQVDEEALMELALEAGAEDIQNAGGVLTVTTVPGTF
CCCCCCCCCEEEEECCCCCEECCHHHCCHHHHHHHHHHHCHHHHHHCCCEEEEEECCCCH
ETVLESLQAKGWESLSAGISMVPDTYLALDEETARKVLKMIDRLEEEEDVQAVYSNADIP
HHHHHHHHHCCHHHHHCCCHHCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
SELVL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876