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The map label for this gene is xprB [H]

Identifier: 189025628

GI number: 189025628

Start: 421972

End: 422865

Strand: Direct

Name: xprB [H]

Synonym: TPASS_0395

Alternate gene names: 189025628

Gene position: 421972-422865 (Clockwise)

Preceding gene: 189025627

Following gene: 189025629

Centisome position: 37.03

GC content: 51.79

Gene sequence:

>894_bases
ATGAGTAATGAGCAGTTTACCCAGTATCTTGAATATCTTTTTCGGGTACGCAGGCTGTCTGCGCATACGGTTTCTGCCTA
TGCGCGCGACTTGAATCTTTTTGAACGCTGGTTGCAACACGCGCAGAGAGCGTGCGCGCGCGTAACAGTTTCTGATATGC
GTCTGTTTGTGTGTGAGTTAGGAAGACGGGGACTTTCCGCAGCGAGTATTAACCGAGTTTTGTCCGTGGTGCGAGGTTTT
TATGTGTTTGCTAAAAAAAAACATTGGTGCGCGGACAATCCTGCACGCTTAGTGAGGAATATAAAAGGTCCTTCAAAGTT
GCCTCGTTTTATGTTTCCACCGCAAGCAAAGGCGTTTTACACCTTACCAAGTCGTACGGATATTTTGTGGCAGGAACGGG
ATGCGGCACTTTTTGCGATGTTGTATTCAACAGGATGTCGCGTTTCAGAGATAGCGGCGCTCTCATTGAAAGATGTGCAT
CCGCATCTTAGTTCTGCGATTGTGCGGGGAAAGGGTGATCGGGAGCGGACCGTGTTTATTGCTCCGTTTGCGCAGAATTT
TTTGCACGTGTATATGCAGGCGCGTGCGCAGCGATGTGCGCGCTACGCCTCTTGCACACCCGCGCTGTTTGTGAATCAGC
GGGGTCGGTCGCTTTCTGTGCGCGGAATACAGTACCTTGTTAGTCGGTACGTGCTTTTGGCCCAGGACGTGCACGCGCTG
TCTCCCCACGCGTTTCGGCACAGTTTTGCTTCGACGTTGATCCGTCGGGGGGCTGATGTGCGCGTTGCGCAAGAGTTATT
AGGACATGCGAGTGTGTCTACCACCCAGCGATATGTGCATGTGACTTCAGAGCAACTGCAGGACTTGTATCACCGTGCGC
ATCCGCGTGGATAG

Upstream 100 bases:

>100_bases
CGGTATGTATCTCCTACTCGAAAAAATCTTTCTCTGGGAAAGGAAGCTGTCTTGGATGGTAGCCACAGGGGGGCACAGGA
TAAAGGAGCAGTGCAACATT

Downstream 100 bases:

>100_bases
GGGGTAGGAACGGAGCGTCCAAACGATGCGGGGAAGCGAGCTGCAGAGAATGTACACCAGTGCGAAGTGCTTTTTTCTGA
GACTTTTTTGAAGAAGACTT

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSNEQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGLSAASINRVLSVVRGF
YVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVH
PHLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHAL
SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPRG

Sequences:

>Translated_297_residues
MSNEQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGLSAASINRVLSVVRGF
YVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVH
PHLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHAL
SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPRG
>Mature_296_residues
SNEQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGLSAASINRVLSVVRGFY
VFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHP
HLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHALS
PHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPRG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=33.2203389830508, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1790244, Length=290, Percent_Identity=30, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33966; Mature: 33834

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRGLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFY
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHCCCCCCCCCCCEEE
TLPSRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFI
ECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEE
APFAQNFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHAL
EHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCCEEHHHHHHHHHHHHHHHHHHHHHC
SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPRG
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SNEQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCEL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRGLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFY
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHCCCCCCCCCCCEEE
TLPSRTDILWQERDAALFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFI
ECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCCCEEEE
APFAQNFLHVYMQARAQRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHAL
EHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCCEEHHHHHHHHHHHHHHHHHHHHHC
SPHAFRHSFASTLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPRG
CHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA