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The map label for this gene is codV [H]

Identifier: 189025624

GI number: 189025624

Start: 417184

End: 418104

Strand: Direct

Name: codV [H]

Synonym: TPASS_0391

Alternate gene names: 189025624

Gene position: 417184-418104 (Clockwise)

Preceding gene: 189025623

Following gene: 189025625

Centisome position: 36.61

GC content: 50.38

Gene sequence:

>921_bases
GTGAAAGACGTCGATATCCGTGTGCAATCCTTTTACGCGTACTTAATTTCGGCAGAGGCGCACGCGCTTTTGACCGCACG
GACGTACGTGACTACGTTGATGCTTTTTCAGAAAAACCTTGATCCGCCGTGTAACATTGAAAGCGCCAATGCGCACGATT
GTGTACGTTTTATCGAAAAGCGGAGTGCTGCGGGTGTCTCAGGCAAAACGATTGCGAAGGACATGGCGGCGCTGCACGCG
TTCTATCAGTTTCTCATTTTGGAGCAGGTGCGTCCTGATAACCCAATGCAAGACGTTGATGCACCGCGTCGTGCGTATTC
ACTGCCGCGCGTGCTGTCTCCCGAACAGGTCAACACTTTTCTGCAATCCATTCCACTGTGCACACCAGGTGGCGTGCGTG
ATCGCGCGCTCTTTGAACTTATTTATGCTGCAGGTTTGCGGGTCAGTGAGGCAGTTTCTCTTTCCCTTTCTGACATTTTT
TTTGCAGAACGTCTGCTAAAAGTGACAGGTAAGGGGAACAAAGAGCGTATGGCTCCCTTTGGAGAACAGGCGTGTTACTT
TCTCATGCAGTATATACGTGAGGCGCGTGTTCGTTTTACGAGCGCGAAGCATCCGGAGAATAGTGAAAAAAAAGGAGCTG
TCTTTTTAAACAGGCAGGGGGGTCGTCTGAGTCGTAAAGGTATATGGAAGCGCCTGCAGGATATTGAAATCCGCTCAGGG
GTGGAGACGCACGTTCATACGTTTCGCCATTCATATGCGACGCATTTGCTTGCAGGCGGTGTCGATTTACATTCGGTTCA
GTGTCTGCTCGGCCATGCAGATATTGCAACTACCCAGGTGTACACACACGTGGAAAATGGACAGCTCGAAGCGTGTCACC
GCGCGTGTTTTTCTTCAGAAGGTCTTCGTGATGAAAACTAG

Upstream 100 bases:

>100_bases
AAAAGAACGGAGTGAAGGGCCACACGTTTGGCGTTCCGCTCCCCTCGGTAAATGAAGATTTGGATGAACCGACCTTTTTG
AGAAATAGGAACAAGGGTCT

Downstream 100 bases:

>100_bases
GCGGTGTGCGTCATATGTGGGCGGTGCACTGTGCGCGGCGTTCTTTTTTTTTCATTCCTGTAAGGAGCGTCGCACCGTGC
AACGTGTTCAGGATTTAGAG

Product: integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKDVDIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKTIAKDMAALHA
FYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIF
FAERLLKVTGKGNKERMAPFGEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSG
VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSEGLRDEN

Sequences:

>Translated_306_residues
MKDVDIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKTIAKDMAALHA
FYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIF
FAERLLKVTGKGNKERMAPFGEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSG
VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSEGLRDEN
>Mature_306_residues
MKDVDIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKTIAKDMAALHA
FYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIF
FAERLLKVTGKGNKERMAPFGEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSG
VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSEGLRDEN

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=254, Percent_Identity=34.6456692913386, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1790244, Length=276, Percent_Identity=34.0579710144928, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI1790768, Length=179, Percent_Identity=30.7262569832402, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34344; Mature: 34344

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDVDIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTF
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCCCCHHHHHHH
LQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKERMAPF
HHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
GEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHEEECCCCCHHHHHHHHHCCC
GLRDEN
CCCCCC
>Mature Secondary Structure
MKDVDIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTF
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCCCCHHHHHHH
LQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKERMAPF
HHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
GEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCC
VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHEEECCCCCHHHHHHHHHCCC
GLRDEN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]