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The map label for this gene is ctc

Identifier: 189025605

GI number: 189025605

Start: 396956

End: 397546

Strand: Direct

Name: ctc

Synonym: TPASS_0372

Alternate gene names: 189025605

Gene position: 396956-397546 (Clockwise)

Preceding gene: 189025604

Following gene: 189025606

Centisome position: 34.84

GC content: 55.84

Gene sequence:

>591_bases
GTGGATGAAAGGCGTTTGAAGGGGAAAAGGCGCGTCCAGTTGGGGAAGTATGCCGCTGTGCGTGGCAGAAAGGAAGGGCG
TTTGCCTGCGGTTATGTATGACCATCGGGGCGTGTCCGTTCCCCTTGAACTTGCGCAGCAAGACTTCGATAGATTGTTTC
GTGCCTTAACCAGGAGTACTGTTCTGTCTTTGGAACTGGATGGTGGCGAGGTCTTTTGCGTTTTTGTTAAGGACTATCAG
CATAACATGGTCAGTGACCGTGTGGAGCATGTGGATTTCTACGCAGTTGAAGAGAGTGTTCCGTTGCGAATGCGAATCCG
GCTGCAGTTGTGTGGTTCTCCTGAAGGAGTGCGCTATGGGGCTCGCTTGGAAAAGGGGCTCTCATATATCGAGGTAGAGT
CTTTGCCGCGCAACTTGCCCGACCGTGTTGTGCTTGATATCAGTGGGCTCGGGGCCGGCGACGTGCGCCGTGTGCGTGAT
GTTCCTCTGCCCGCGTCGGTGGTGGTTCTCAGCGATCCTGATGCGGTGATTGTGGCACTCAGTTCTTCTGCTTCCGAAGC
GGGTTCACCCGCTGGCGCGAGGACCGGCTAG

Upstream 100 bases:

>100_bases
AGTGGTAAGCCAACGGTTTTTGGTACCGTCATTCCGTAGGTTCGAATCCTACCGTCCCAGTTTGCGGCGTGTTCGCTTTC
TGTGCATGGAGGATTGGATT

Downstream 100 bases:

>100_bases
ATGGTGCGCGGTGTAACGCGCGCGGTGCGGCACACTGTGCAGCGTGCCCGTCTTTATAGGTGAGTGAGTCTAGGCAGAAG
CTTCACCCGCTGCTCGTCCA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MDERRLKGKRRVQLGKYAAVRGRKEGRLPAVMYDHRGVSVPLELAQQDFDRLFRALTRSTVLSLELDGGEVFCVFVKDYQ
HNMVSDRVEHVDFYAVEESVPLRMRIRLQLCGSPEGVRYGARLEKGLSYIEVESLPRNLPDRVVLDISGLGAGDVRRVRD
VPLPASVVVLSDPDAVIVALSSSASEAGSPAGARTG

Sequences:

>Translated_196_residues
MDERRLKGKRRVQLGKYAAVRGRKEGRLPAVMYDHRGVSVPLELAQQDFDRLFRALTRSTVLSLELDGGEVFCVFVKDYQ
HNMVSDRVEHVDFYAVEESVPLRMRIRLQLCGSPEGVRYGARLEKGLSYIEVESLPRNLPDRVVLDISGLGAGDVRRVRD
VPLPASVVVLSDPDAVIVALSSSASEAGSPAGARTG
>Mature_196_residues
MDERRLKGKRRVQLGKYAAVRGRKEGRLPAVMYDHRGVSVPLELAQQDFDRLFRALTRSTVLSLELDGGEVFCVFVKDYQ
HNMVSDRVEHVDFYAVEESVPLRMRIRLQLCGSPEGVRYGARLEKGLSYIEVESLPRNLPDRVVLDISGLGAGDVRRVRD
VPLPASVVVLSDPDAVIVALSSSASEAGSPAGARTG

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_TREPA (O83387)

Other databases:

- EMBL:   AE000520
- PIR:   C71333
- RefSeq:   NP_218812.1
- ProteinModelPortal:   O83387
- SMR:   O83387
- IntAct:   O83387
- GeneID:   2611254
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0372
- NMPDR:   fig|243276.1.peg.371
- TIGR:   TP_0372
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   PRK05618
- BioCyc:   TPAL243276:TP_0372-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21619; Mature: 21619

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERRLKGKRRVQLGKYAAVRGRKEGRLPAVMYDHRGVSVPLELAQQDFDRLFRALTRST
CCCCCCCCCHHEECCHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCE
VLSLELDGGEVFCVFVKDYQHNMVSDRVEHVDFYAVEESVPLRMRIRLQLCGSPEGVRYG
EEEEEECCCEEEEEEEECCCCHHHHHHHHHCEEEEECCCCCEEEEEEEEECCCCCCCEEH
ARLEKGLSYIEVESLPRNLPDRVVLDISGLGAGDVRRVRDVPLPASVVVLSDPDAVIVAL
HHHHHCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEE
SSSASEAGSPAGARTG
ECCCCCCCCCCCCCCC
>Mature Secondary Structure
MDERRLKGKRRVQLGKYAAVRGRKEGRLPAVMYDHRGVSVPLELAQQDFDRLFRALTRST
CCCCCCCCCHHEECCHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCE
VLSLELDGGEVFCVFVKDYQHNMVSDRVEHVDFYAVEESVPLRMRIRLQLCGSPEGVRYG
EEEEEECCCEEEEEEEECCCCHHHHHHHHHCEEEEECCCCCEEEEEEEEECCCCCCCEEH
ARLEKGLSYIEVESLPRNLPDRVVLDISGLGAGDVRRVRDVPLPASVVVLSDPDAVIVAL
HHHHHCCCEEEECCCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCEEEEECCCCEEEEEE
SSSASEAGSPAGARTG
ECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876