Click here to switch to the map view.

The map label for this gene is 189025510

Identifier: 189025510

GI number: 189025510

Start: 292721

End: 293605

Strand: Reverse

Name: 189025510

Synonym: TPASS_0276

Alternate gene names: NA

Gene position: 293605-292721 (Counterclockwise)

Preceding gene: 189025511

Following gene: 189025509

Centisome position: 25.77

GC content: 56.72

Gene sequence:

>885_bases
GTGGTGTTGTCGCACAGCGTCCGGCGCGCTCAGCGCGTGGATATTATGAAACAATTGCTGATAACCGCAGAACCGGATTC
CGGCGGGTATGTGCAGCTTTCAGGCAAGGATTTTCATTACATGGTGCGTGTTCGACGCGCACGCGTGGGGGATACATTCA
CCCTGCGTACGCAGGCCGGTGCGCAGTACAGCGCAGTAGTATCCGCTCTCGACATACATACGCGTTCACTAATCCTCCAC
TGCACGCCCATGCCCCCAGTGGATGAGAAAACGCAGGTAACGCTTGTGTTGCTTCAGTGGATGCCCCGTGCGCGCGTCTT
TGACGCGATCGTTCGGCATGCGACAGAACTTGGAACTGCGCGCATCATACCGATTCGAGGAGAACGTTCGCTCATCCGCG
ATGAAAAAGACACCCAGCATGCACGCTTGCAGCGCATCGTGCGGGAAGCGCGTCAACAGTCTGGTTCTGCCGTGAACACC
CGTGTGGACACGCTCCACAGCCTCCTTGGCGCACTGCATATGCTCGAGCAGGAATTTCCTTATCCTTCTGCAGTGCGTAT
CTATTGCAGTGAAAAACACGTGGGAGGTTCCTTTCACGAACTGCTTTGGACAGGACGTTCTACACACTGCACCGCGCACC
GTACGCCCACAGAGCCAAATGCGCCGCACAACACGCCGGATGTGCGCGCGCAGGCGGTTATACTTGCAGTAGGCGCTGAA
GGCGGTTTTTCTGATACAGAAGAGCGCACGCTTCATGACGCGCACTTTGCACCCCTGCACTTTCGCACGAATGTGCTGCG
CGTAGAAACGGCCGCGCTCTATGCTCTTGCAGGCGCACATCTCCTTCTTAGTGAGGCAGCACTATGGAACAAACGCAGCT
GGTAA

Upstream 100 bases:

>100_bases
TCGGTCCCGCTGCCCAGGCTATGGGAGCCAGACTGTGCGTGCTCGGCGCCGCACTACTTTCAGATATGTATAGGGTTTAC
GGTGAGAGAAGTTCCTTACG

Downstream 100 bases:

>100_bases
CGCGCATTGAGTTCCTTTCCGTACCCCTTGATGTGGTGCGTGAAGAGTATCTGTGCACCGTCATTCTCTCCCTGTTAGAA
AAAAAAGAGCCGCAGCACAT

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MVLSHSVRRAQRVDIMKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTRSLILH
CTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTARIIPIRGERSLIRDEKDTQHARLQRIVREARQQSGSAVNT
RVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVGGSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAE
GGFSDTEERTLHDAHFAPLHFRTNVLRVETAALYALAGAHLLLSEAALWNKRSW

Sequences:

>Translated_294_residues
MVLSHSVRRAQRVDIMKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTRSLILH
CTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTARIIPIRGERSLIRDEKDTQHARLQRIVREARQQSGSAVNT
RVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVGGSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAE
GGFSDTEERTLHDAHFAPLHFRTNVLRVETAALYALAGAHLLLSEAALWNKRSW
>Mature_294_residues
MVLSHSVRRAQRVDIMKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAGAQYSAVVSALDIHTRSLILH
CTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTARIIPIRGERSLIRDEKDTQHARLQRIVREARQQSGSAVNT
RVDTLHSLLGALHMLEQEFPYPSAVRIYCSEKHVGGSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAE
GGFSDTEERTLHDAHFAPLHFRTNVLRVETAALYALAGAHLLLSEAALWNKRSW

Specific function: Unknown

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32961; Mature: 32961

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSHSVRRAQRVDIMKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAG
CCCCHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCEEEHHHHHHHHCCCEEEEEECCC
AQYSAVVSALDIHTRSLILHCTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTA
CHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHEEEEEEHHCCHHHHHHHHHHHHHHCCCE
RIIPIRGERSLIRDEKDTQHARLQRIVREARQQSGSAVNTRVDTLHSLLGALHMLEQEFP
EEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
YPSAVRIYCSEKHVGGSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAE
CCCEEEEEECCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEECC
GGFSDTEERTLHDAHFAPLHFRTNVLRVETAALYALAGAHLLLSEAALWNKRSW
CCCCCCHHHHHHHCCCCCEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVLSHSVRRAQRVDIMKQLLITAEPDSGGYVQLSGKDFHYMVRVRRARVGDTFTLRTQAG
CCCCHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCEEEHHHHHHHHCCCEEEEEECCC
AQYSAVVSALDIHTRSLILHCTPMPPVDEKTQVTLVLLQWMPRARVFDAIVRHATELGTA
CHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHEEEEEEHHCCHHHHHHHHHHHHHHCCCE
RIIPIRGERSLIRDEKDTQHARLQRIVREARQQSGSAVNTRVDTLHSLLGALHMLEQEFP
EEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
YPSAVRIYCSEKHVGGSFHELLWTGRSTHCTAHRTPTEPNAPHNTPDVRAQAVILAVGAE
CCCEEEEEECCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEEECC
GGFSDTEERTLHDAHFAPLHFRTNVLRVETAALYALAGAHLLLSEAALWNKRSW
CCCCCCHHHHHHHCCCCCEEEECCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA