| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is yleA [C]
Identifier: 189025503
GI number: 189025503
Start: 285765
End: 287213
Strand: Direct
Name: yleA [C]
Synonym: TPASS_0269
Alternate gene names: 189025503
Gene position: 285765-287213 (Clockwise)
Preceding gene: 189025502
Following gene: 189025504
Centisome position: 25.08
GC content: 50.38
Gene sequence:
>1449_bases GTGTTTTCCGTTCGCATCGAGACGCTTGGCTGTCGTCTGAATCATGTCGAGTCTGAGTCGCTGGCAGCGCTCTTCTTGCA GGAGGGCTTTGCGGTATGCCGTGGCAATACCTCCACTGCCCCAGTGGTTCTGTGTGTGATCAACACCTGCACGGTCACAA GTAAGGCAGAGCAAAAGGCGCGGCGCCTCGTTCGTCTCCTGTTGCGCACATATCCTACTGCAATAGCGCTTGTCACTGGA TGTTATGCGCAGCTTGAGCCTGCTTCTCTTGAAGCCATGGATGATCGTGTCCTTGCTTTTCCAGGAAAACAAAAAGATGC CCTCAGCCTTCTGCCCTCGTGTCTCCGTGCGTTACTTGTGCAGCGTGGTCCTGCGCCGATAGATCAGTATGTATGCGGTA TGCGTGCGCTGCTCGCTTCTTTGAAGAAAAAAATTATTTCTTTGGAACTAACGTCTGAGTTTCCATCGCAGACGCATATG CCCACAAGGAATGCCCTTCCTCAGTTAACCGGTGTGCCTCATGCGCCGCGCGTTTCTGTATCTTCGTTTTCAGAACCTAC AGCCGTTCCCCGTTTTGCTTTGTATGCCCCTCGTTTTTTGTTCCACTCACGCGCAAGCATTAAGGTGCAGGACGGTTGTA ACAGTGGATGCGCTTTTTGTCGCATTCGTTTTGCACGCGGTCGCGCTGTATCACTTGAAACACACGAGGTAATTGGGCGG GTGCAGGCCCTTGAAGCTCGTGGTATGAGCGAGGTTGTACTTACAGGGGTGAACTTGTCTCAGTATAGAAGTGGCAGTAT AGATTTTGCGGGTTTATTAGAGTTGATTGTGCAGGAAACGCATACGATTCATATTAGAATTTCGAGTTTGTACCCAGAAA GCGTAACATCTGCTTTTTTGCGTGCTATTGCGCACACGCGCGTGTCGCCTCATTTTCATTTATCGGTTCAGTCGGGCAGT GATCGCGTGTTACGACGCATGCGACGCGCTTACACACGTGCGGACATTTATCAGGCAGTTTCCGATTTACGGAGTGTGCG TGAAGAACCCTTTTTGGGTTGTGACATAATCGTCGGCTTTCCAGGGGAAACAGAGGAAGATTTTGCAGACACCCAGCGTA TGTGCAAAACTTTGCGTTTTGCAGGTATTCATGTATTTCCGTTTTCTGCACGCCCCGGTACAGAGGCGTTTGCTATGGAT GCAAAAGTGCCTCAGCGTATTGCAGGAGAACGCGTTGCTGCAATGCAGCAACTGGCAGAGAAAAACTACCGTGCGTATTT GGAATATTGGAATGGGAGGGAACTATGTGCGGTGGTAGAACAGTCCGTCGCACGTGTTTTGACAGAAAATTATTTGAGCC TCCCAATCATTGAACGGGGTGGCGTCGCTGCCTCAGCAGGATCACACGTAAGGATTAGAGTTCATAACGAGGGTGCTATC CTCTTGTGA
Upstream 100 bases:
>100_bases GGCCTACGACCGAGCGCTCCAGCTGAATAGAGATCTGGCTGATGCTCGCCGGGGCAGGGAGCGGGTGCTGAGGTACGTGT TCCGTAGGTAGGTTTTCTTC
Downstream 100 bases:
>100_bases GTTTCTGATTCGCAGTGGAGATTCATTGTTGTTAGAAAAAAACGAGCATGCAGTAGAGCGTGAGGAAGGGTCTGTGCGCG TGTTTCCTGTCTGTCCGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKARRLVRLLLRTYPTAIALVTG CYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRALLVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHM PTRNALPQLTGVPHAPRVSVSSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGR VQALEARGMSEVVLTGVNLSQYRSGSIDFAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRVSPHFHLSVQSGS DRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMD AKVPQRIAGERVAAMQQLAEKNYRAYLEYWNGRELCAVVEQSVARVLTENYLSLPIIERGGVAASAGSHVRIRVHNEGAI LL
Sequences:
>Translated_482_residues MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKARRLVRLLLRTYPTAIALVTG CYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRALLVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHM PTRNALPQLTGVPHAPRVSVSSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGR VQALEARGMSEVVLTGVNLSQYRSGSIDFAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRVSPHFHLSVQSGS DRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMD AKVPQRIAGERVAAMQQLAEKNYRAYLEYWNGRELCAVVEQSVARVLTENYLSLPIIERGGVAASAGSHVRIRVHNEGAI LL >Mature_482_residues MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKARRLVRLLLRTYPTAIALVTG CYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRALLVQRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHM PTRNALPQLTGVPHAPRVSVSSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGR VQALEARGMSEVVLTGVNLSQYRSGSIDFAGLLELIVQETHTIHIRISSLYPESVTSAFLRAIAHTRVSPHFHLSVQSGS DRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGFPGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMD AKVPQRIAGERVAAMQQLAEKNYRAYLEYWNGRELCAVVEQSVARVLTENYLSLPIIERGGVAASAGSHVRIRVHNEGAI LL
Specific function: Unknown
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 MTTase N-terminal domain
Homologues:
Organism=Homo sapiens, GI93277076, Length=241, Percent_Identity=28.6307053941909, Blast_Score=105, Evalue=7e-23, Organism=Homo sapiens, GI28872782, Length=240, Percent_Identity=28.3333333333333, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI28872784, Length=240, Percent_Identity=28.3333333333333, Blast_Score=100, Evalue=4e-21, Organism=Escherichia coli, GI1786882, Length=306, Percent_Identity=30.718954248366, Blast_Score=131, Evalue=8e-32, Organism=Escherichia coli, GI1787057, Length=445, Percent_Identity=23.3707865168539, Blast_Score=100, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17553146, Length=238, Percent_Identity=29.8319327731092, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71996771, Length=247, Percent_Identity=28.7449392712551, Blast_Score=89, Evalue=7e-18, Organism=Drosophila melanogaster, GI21356207, Length=483, Percent_Identity=25.2587991718427, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI19922432, Length=423, Percent_Identity=26.0047281323877, Blast_Score=118, Evalue=7e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y269_TREPA (O83293)
Other databases:
- EMBL: AE000520 - PIR: G71345 - RefSeq: NP_218710.1 - ProteinModelPortal: O83293 - SMR: O83293 - IntAct: O83293 - GeneID: 2611608 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0269 - NMPDR: fig|243276.1.peg.269 - TIGR: TP_0269 - HOGENOM: HBG457663 - OMA: LHVFPFS - ProtClustDB: CLSK218616 - BioCyc: TPAL243276:TP_0269-MONOMER - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006467 - InterPro: IPR007197 - PANTHER: PTHR11918 - SMART: SM00729 - TIGRFAMs: TIGR01579 - TIGRFAMs: TIGR00089
Pfam domain/function: PF04055 Radical_SAM; PF00919 UPF0004
EC number: NA
Molecular weight: Translated: 53174; Mature: 53174
Theoretical pI: Translated: 9.05; Mature: 9.05
Prosite motif: PS51449 MTTASE_N; PS01278 MTTASE_RADICAL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKA CCEEEEEEECCEECCCCHHHHHHHHHHHCHHEECCCCCCCCEEEEEEECCCCCHHHHHHH RRLVRLLLRTYPTAIALVTGCYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRALLV HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH QRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHMPTRNALPQLTGVPHAPRVSV HCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCC SSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGR CCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCEEEEHHHHHHHH VQALEARGMSEVVLTGVNLSQYRSGSIDFAGLLELIVQETHTIHIRISSLYPESVTSAFL HHHHHHCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH RAIAHTRVSPHFHLSVQSGSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGF HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC PGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQLAE CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH KNYRAYLEYWNGRELCAVVEQSVARVLTENYLSLPIIERGGVAASAGSHVRIRVHNEGAI HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCCEEEEEEECCCCE LL EC >Mature Secondary Structure MFSVRIETLGCRLNHVESESLAALFLQEGFAVCRGNTSTAPVVLCVINTCTVTSKAEQKA CCEEEEEEECCEECCCCHHHHHHHHHHHCHHEECCCCCCCCEEEEEEECCCCCHHHHHHH RRLVRLLLRTYPTAIALVTGCYAQLEPASLEAMDDRVLAFPGKQKDALSLLPSCLRALLV HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH QRGPAPIDQYVCGMRALLASLKKKIISLELTSEFPSQTHMPTRNALPQLTGVPHAPRVSV HCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCC SSFSEPTAVPRFALYAPRFLFHSRASIKVQDGCNSGCAFCRIRFARGRAVSLETHEVIGR CCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEEECCCCEEEEHHHHHHHH VQALEARGMSEVVLTGVNLSQYRSGSIDFAGLLELIVQETHTIHIRISSLYPESVTSAFL HHHHHHCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH RAIAHTRVSPHFHLSVQSGSDRVLRRMRRAYTRADIYQAVSDLRSVREEPFLGCDIIVGF HHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC PGETEEDFADTQRMCKTLRFAGIHVFPFSARPGTEAFAMDAKVPQRIAGERVAAMQQLAE CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHH KNYRAYLEYWNGRELCAVVEQSVARVLTENYLSLPIIERGGVAASAGSHVRIRVHNEGAI HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCCEEEEEEECCCCE LL EC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876