| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025495
Identifier: 189025495
GI number: 189025495
Start: 273501
End: 274544
Strand: Direct
Name: 189025495
Synonym: TPASS_0261
Alternate gene names: NA
Gene position: 273501-274544 (Clockwise)
Preceding gene: 189025493
Following gene: 189025496
Centisome position: 24.0
GC content: 54.5
Gene sequence:
>1044_bases GTGGGAGCCACGCTTTTTCTCGGTGTCGCGTGGAAGACGGAGGCAGACGTGCCAAAAGCCATTCAGTATAAGGCCAATTC GGTTATCTATTTTTCAGGCGATCTTGACGATCGTGTTATGATCCTGAATAAGGGGCACGTGGCGCTTACCTTTGCGGATG TCGAAACAGGGTCGCAGGTGACTGAGTACATTAAAACTGGTGAGTTCTTTGGGGTTAAGTCTGCGCTCGGTAATTTTCCT CGTGAAGAGAATGCGATCACCTTGGTGGATTCGATTGTGTATGCGTTTGGGAGTCAGGAGTTTGAAGCCTTTGCTCAAAC GAACATTCGCATTGTTATGAAGATGCTCAAGGTGTTCTCTCGCCAACTGCGGAGCGTGCATCGGCAGCTTGAGTCGCTCC TTGACTCTCAGGAGGAGACAAATAACGAGGAGGGTTTGTACACCGTTGCCCGTGCCTTTCACGCCTCTGAGCATTACCTT GCTGCAAGTCAGGTGGCGCAGCGTTACCGGGAACTGTATCCGGACGGAAAGCATCGGCACGATATTGCGTCGATGCTTGA GAGCGCCGACGGTACAGTCGGGCGCGGCTTTGAGGAGGCGGGTGCGCAAGGTTCGGATGCGGGTTTTGAGGTGCCTTCTG CTTTTGCTGAGTCAGCTGTCGATTCTGAAGTGGGGGATCTGCGTGCCGCAGAGCTTCTTGAGCAACAGGGAAAGTGGGGT GAGGCCTATGAGCATTACCGGTTAGGGTGCGCGTCGAACGGGGGAGTGGGCGCGGAGGCTGCGTATCTGGGTGCGGGGCG GTGTCTTTTTGAGCAGAGGGAGTTTGTGCGGAGCATTCAGACGTTCACTGAGTGCATTACCCGCAATCCGAAGTCTACGC GTCTTGCGGAGGTGCTGATGTATCTGGGACAGTGCTATCAGGGTATGGGGAGGCCGGATAAGGCGATTTCTTTTTACGAC AAGGCGCTTTCTACCGCTCCTGAGTCTTTAGTTCCGCGCATAAAAGAGCTCCAGCGTTCCTGTGAGGAGGCGTCGCATGG CTGA
Upstream 100 bases:
>100_bases AAAGGCGTGCGAACGATCTCTGCAGGTGTGCGCGCAGGAGCGCGTGACGTGAATTCTGGAAAAAGACTTAAGTGCATGAC CGTTCTATCGAAAATGTACC
Downstream 100 bases:
>100_bases TGCCTTTGCCTCGTTTACGCGCTTTGCCAAAAAGTTTCAGCGGGGTTCTGTTATCTTCGCAGAGTTTGATGTGGGGGAGA GTTTCTACCTCGTGCAGAGC
Product: catabolite gene activator
Products: NA
Alternate protein names: Catabolite Gene Activator
Number of amino acids: Translated: 347; Mature: 346
Protein sequence:
>347_residues MGATLFLGVAWKTEADVPKAIQYKANSVIYFSGDLDDRVMILNKGHVALTFADVETGSQVTEYIKTGEFFGVKSALGNFP REENAITLVDSIVYAFGSQEFEAFAQTNIRIVMKMLKVFSRQLRSVHRQLESLLDSQEETNNEEGLYTVARAFHASEHYL AASQVAQRYRELYPDGKHRHDIASMLESADGTVGRGFEEAGAQGSDAGFEVPSAFAESAVDSEVGDLRAAELLEQQGKWG EAYEHYRLGCASNGGVGAEAAYLGAGRCLFEQREFVRSIQTFTECITRNPKSTRLAEVLMYLGQCYQGMGRPDKAISFYD KALSTAPESLVPRIKELQRSCEEASHG
Sequences:
>Translated_347_residues MGATLFLGVAWKTEADVPKAIQYKANSVIYFSGDLDDRVMILNKGHVALTFADVETGSQVTEYIKTGEFFGVKSALGNFP REENAITLVDSIVYAFGSQEFEAFAQTNIRIVMKMLKVFSRQLRSVHRQLESLLDSQEETNNEEGLYTVARAFHASEHYL AASQVAQRYRELYPDGKHRHDIASMLESADGTVGRGFEEAGAQGSDAGFEVPSAFAESAVDSEVGDLRAAELLEQQGKWG EAYEHYRLGCASNGGVGAEAAYLGAGRCLFEQREFVRSIQTFTECITRNPKSTRLAEVLMYLGQCYQGMGRPDKAISFYD KALSTAPESLVPRIKELQRSCEEASHG >Mature_346_residues GATLFLGVAWKTEADVPKAIQYKANSVIYFSGDLDDRVMILNKGHVALTFADVETGSQVTEYIKTGEFFGVKSALGNFPR EENAITLVDSIVYAFGSQEFEAFAQTNIRIVMKMLKVFSRQLRSVHRQLESLLDSQEETNNEEGLYTVARAFHASEHYLA ASQVAQRYRELYPDGKHRHDIASMLESADGTVGRGFEEAGAQGSDAGFEVPSAFAESAVDSEVGDLRAAELLEQQGKWGE AYEHYRLGCASNGGVGAEAAYLGAGRCLFEQREFVRSIQTFTECITRNPKSTRLAEVLMYLGQCYQGMGRPDKAISFYDK ALSTAPESLVPRIKELQRSCEEASHG
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38313; Mature: 38182
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS50042 CNMP_BINDING_3 ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATLFLGVAWKTEADVPKAIQYKANSVIYFSGDLDDRVMILNKGHVALTFADVETGSQV CCCEEEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCHHH TEYIKTGEFFGVKSALGNFPREENAITLVDSIVYAFGSQEFEAFAQTNIRIVMKMLKVFS HHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH RQLRSVHRQLESLLDSQEETNNEEGLYTVARAFHASEHYLAASQVAQRYRELYPDGKHRH HHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH DIASMLESADGTVGRGFEEAGAQGSDAGFEVPSAFAESAVDSEVGDLRAAELLEQQGKWG HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EAYEHYRLGCASNGGVGAEAAYLGAGRCLFEQREFVRSIQTFTECITRNPKSTRLAEVLM HHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH YLGQCYQGMGRPDKAISFYDKALSTAPESLVPRIKELQRSCEEASHG HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GATLFLGVAWKTEADVPKAIQYKANSVIYFSGDLDDRVMILNKGHVALTFADVETGSQV CCEEEEEEEECCCCCCCHHHHCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCHHH TEYIKTGEFFGVKSALGNFPREENAITLVDSIVYAFGSQEFEAFAQTNIRIVMKMLKVFS HHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH RQLRSVHRQLESLLDSQEETNNEEGLYTVARAFHASEHYLAASQVAQRYRELYPDGKHRH HHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH DIASMLESADGTVGRGFEEAGAQGSDAGFEVPSAFAESAVDSEVGDLRAAELLEQQGKWG HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EAYEHYRLGCASNGGVGAEAAYLGAGRCLFEQREFVRSIQTFTECITRNPKSTRLAEVLM HHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH YLGQCYQGMGRPDKAISFYDKALSTAPESLVPRIKELQRSCEEASHG HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA