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The map label for this gene is rpsT

Identifier: 189025484

GI number: 189025484

Start: 263793

End: 264080

Strand: Direct

Name: rpsT

Synonym: TPASS_0250b

Alternate gene names: 189025484

Gene position: 263793-264080 (Clockwise)

Preceding gene: 189025483

Following gene: 189025485

Centisome position: 23.15

GC content: 55.9

Gene sequence:

>288_bases
ATGGGTAGGAGTGTATCCGCCAGGAAGAGGCATGATCAGAGTGAGGTGCGTAGGATGCGTGGTAGGATGGCTAGGTCTGC
GGCGCGTACTTGTGCGCGGAGGTATTTGGCTGCTGTTACATCCGGGGATAGGGAGAGTTCTCTGCCTCTACTTAGGAGCT
TGGTGAAGCGACTTGACACCGCTGCCCGGAAAGGTGTTTTCGCTAGAAAGGCTGTGGCTCGCCAGAAGTCCCGAATGTGT
AGACTGTACAACGGTGTGTTCTCTTCACCCGAGGTGGTGCGCGTTTGA

Upstream 100 bases:

>100_bases
CCTAGGGAGAGGGGGCGGTGGGGTTCTAGGCGCGGGGCGTGTCTTTTCCCTCTCTTCTTTTCTTGGGTTTTAGCGGTGTT
TTGGCGTTCGGGGAGGTCGG

Downstream 100 bases:

>100_bases
GGCGGCTGTTTGCCCGCGTGTGTTTCTTGTCGTGAAGAGAGTTAGGAGAACGCGGTCTTTCGTTGTCGATGCACTTTGTG
ACGAGGTGGATTTGAGCCGT

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MGRSVSARKRHDQSEVRRMRGRMARSAARTCARRYLAAVTSGDRESSLPLLRSLVKRLDTAARKGVFARKAVARQKSRMC
RLYNGVFSSPEVVRV

Sequences:

>Translated_95_residues
MGRSVSARKRHDQSEVRRMRGRMARSAARTCARRYLAAVTSGDRESSLPLLRSLVKRLDTAARKGVFARKAVARQKSRMC
RLYNGVFSSPEVVRV
>Mature_94_residues
GRSVSARKRHDQSEVRRMRGRMARSAARTCARRYLAAVTSGDRESSLPLLRSLVKRLDTAARKGVFARKAVARQKSRMCR
LYNGVFSSPEVVRV

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_TREPS (B2S2J8)

Other databases:

- EMBL:   CP000805
- RefSeq:   YP_001933256.1
- ProteinModelPortal:   B2S2J8
- GeneID:   6333536
- GenomeReviews:   CP000805_GR
- KEGG:   tpp:TPASS_0250b
- HOGENOM:   HBG734145
- ProtClustDB:   PRK00239
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 10752; Mature: 10621

Theoretical pI: Translated: 12.42; Mature: 12.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRSVSARKRHDQSEVRRMRGRMARSAARTCARRYLAAVTSGDRESSLPLLRSLVKRLDT
CCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AARKGVFARKAVARQKSRMCRLYNGVFSSPEVVRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure 
GRSVSARKRHDQSEVRRMRGRMARSAARTCARRYLAAVTSGDRESSLPLLRSLVKRLDT
CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AARKGVFARKAVARQKSRMCRLYNGVFSSPEVVRV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA