| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025390
Identifier: 189025390
GI number: 189025390
Start: 179869
End: 180771
Strand: Reverse
Name: 189025390
Synonym: TPASS_0157
Alternate gene names: NA
Gene position: 180771-179869 (Counterclockwise)
Preceding gene: 189025391
Following gene: 189025389
Centisome position: 15.86
GC content: 50.17
Gene sequence:
>903_bases GTGAGTATACATTCGTTGCAGCAGACTTTTAGCGACATCGTCCCGCTCCTGGAGCAGTATACGCGCGCAGACCGCTTCAT GCGGGAGGATAATTTGTTACACGAGAGAAACGAACCTATCCGGCGTATCGTTGAGTCCCTCGTCGCCCGCATATTACTCC CCGGCTCCACAATGCGCGGAAATGAGCAAATCGCATCCTTTTTACATAAAACCAATGAAGGGAAACGGGGACTCATTCTT GCGGAACACTACAGCAATTTTGACTTACCCTGTCTGCTCTACCTTATGGAACAAGGAAGTAGTGCCGGGCGCATGCTTTC AGAAAAAATCGTATCTATTGCCGGTATTAAACTTCGTGAAGAAAATCGCATCCTGGCAATGCTCACCGAAGGATATGATC ACCTGGTGATATATCCCAGTAGGAGTTTGGCCACCATCACTGATGCGCACTGTCTTGCAAGAGAGACAAAGCGCAGCCGA GCACTGAATCGTGCAGCTATGAAGTATTTAGAGGAACTGCGCAACGCGGGAAAGGTGATTCTCGTGTTTCCTGCAGGGAC ACGCTACCGACCCGGGAGACCGGAAACAAAGCGAGGGGTGCGCGAAGTATACTCCTACATAAAACACGCCGAGGTACTGC TCCTTATTTCAATCAATGGGAATTGTTTGCGCGTTGCAGAACGTTCAACTGATATGACGGAAGACGCGGTGCATCCGGAT GTCGTGCTTCTTGAAGCGCGCACTGTAGACGACTGCGCCCTTTTTCGAGAAAAAGCGCTGGACTGGCACCGCACACACAA CGTGGCGGCACCGTCAGAGGATAAAAAACAAATCGTAGTCGACTATGTCATGCACCTTTTGGAAGAAATGCACGAGCACA ATGAACGAGAAAGGCTATCGTGA
Upstream 100 bases:
>100_bases ACTGTCATGCAGAACTGCCTCCTTCTGCACGCATGACACGCGTAAAAACAATTTATGAATTGCCCGCACACCTTGCACGC CTCGCCCAAGGAGACAATCA
Downstream 100 bases:
>100_bases ATTTTTCGCTGGAATTCCCCGTAAGATCCTATGAGCTAGACGGATACGGACACGTGAACAATGCGGTATATCTCCAATAT TTTGAATATGCGCGCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSIHSLQQTFSDIVPLLEQYTRADRFMREDNLLHERNEPIRRIVESLVARILLPGSTMRGNEQIASFLHKTNEGKRGLIL AEHYSNFDLPCLLYLMEQGSSAGRMLSEKIVSIAGIKLREENRILAMLTEGYDHLVIYPSRSLATITDAHCLARETKRSR ALNRAAMKYLEELRNAGKVILVFPAGTRYRPGRPETKRGVREVYSYIKHAEVLLLISINGNCLRVAERSTDMTEDAVHPD VVLLEARTVDDCALFREKALDWHRTHNVAAPSEDKKQIVVDYVMHLLEEMHEHNERERLS
Sequences:
>Translated_300_residues MSIHSLQQTFSDIVPLLEQYTRADRFMREDNLLHERNEPIRRIVESLVARILLPGSTMRGNEQIASFLHKTNEGKRGLIL AEHYSNFDLPCLLYLMEQGSSAGRMLSEKIVSIAGIKLREENRILAMLTEGYDHLVIYPSRSLATITDAHCLARETKRSR ALNRAAMKYLEELRNAGKVILVFPAGTRYRPGRPETKRGVREVYSYIKHAEVLLLISINGNCLRVAERSTDMTEDAVHPD VVLLEARTVDDCALFREKALDWHRTHNVAAPSEDKKQIVVDYVMHLLEEMHEHNERERLS >Mature_299_residues SIHSLQQTFSDIVPLLEQYTRADRFMREDNLLHERNEPIRRIVESLVARILLPGSTMRGNEQIASFLHKTNEGKRGLILA EHYSNFDLPCLLYLMEQGSSAGRMLSEKIVSIAGIKLREENRILAMLTEGYDHLVIYPSRSLATITDAHCLARETKRSRA LNRAAMKYLEELRNAGKVILVFPAGTRYRPGRPETKRGVREVYSYIKHAEVLLLISINGNCLRVAERSTDMTEDAVHPDV VLLEARTVDDCALFREKALDWHRTHNVAAPSEDKKQIVVDYVMHLLEEMHEHNERERLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34469; Mature: 34338
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIHSLQQTFSDIVPLLEQYTRADRFMREDNLLHERNEPIRRIVESLVARILLPGSTMRG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC NEQIASFLHKTNEGKRGLILAEHYSNFDLPCLLYLMEQGSSAGRMLSEKIVSIAGIKLRE HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEC ENRILAMLTEGYDHLVIYPSRSLATITDAHCLARETKRSRALNRAAMKYLEELRNAGKVI CCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LVFPAGTRYRPGRPETKRGVREVYSYIKHAEVLLLISINGNCLRVAERSTDMTEDAVHPD EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEECCCCCCCHHCCCCC VVLLEARTVDDCALFREKALDWHRTHNVAAPSEDKKQIVVDYVMHLLEEMHEHNERERLS EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure SIHSLQQTFSDIVPLLEQYTRADRFMREDNLLHERNEPIRRIVESLVARILLPGSTMRG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC NEQIASFLHKTNEGKRGLILAEHYSNFDLPCLLYLMEQGSSAGRMLSEKIVSIAGIKLRE HHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEC ENRILAMLTEGYDHLVIYPSRSLATITDAHCLARETKRSRALNRAAMKYLEELRNAGKVI CCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LVFPAGTRYRPGRPETKRGVREVYSYIKHAEVLLLISINGNCLRVAERSTDMTEDAVHPD EEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCEEEEECCCCCCCHHCCCCC VVLLEARTVDDCALFREKALDWHRTHNVAAPSEDKKQIVVDYVMHLLEEMHEHNERERLS EEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA