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The map label for this gene is yjfH [C]

Identifier: 189025343

GI number: 189025343

Start: 123759

End: 124637

Strand: Reverse

Name: yjfH [C]

Synonym: TPASS_0109

Alternate gene names: 189025343

Gene position: 124637-123759 (Counterclockwise)

Preceding gene: 189025346

Following gene: 189025342

Centisome position: 10.94

GC content: 55.29

Gene sequence:

>879_bases
ATGGTTATTTCAGGATTACGCGCCATCGAAGAGTTTCTGCGCGCGCAGCCTGCTGCGCTAGAAGGGTTACACGCGGGAGG
AAAAAACAGCAAGACGCAACAAAGCTGCGTGCGTGTGCTCACGCTCTATTATGCAGCGGAAAATGCGCGCATCAAACGAC
TCCTTGGTATGGCCGCGGCACGGGGGATACGGATCACGCACACAACGTGTGCTGTGCTTGATAAGCTAGCGCGTAGTTTA
CCCCCTGCGCTGCGCGATCACCGCGGTATCCTTGCTGTTCTAAGTTCACCGAGCGCAACGCCGCAGGGTTCTCATACAAG
AAAAAAACGACCCGCTGTGGACAGCTCGCAGGAACGAACGTTGTTACATGCACTGGCAACGCACACGCACGCGCTTGTGC
TCGTCTTAGACGCAATTACTGATCCCCACAACGTTGGGGCAATTGTACGCAGTGCAGACCAATTTTCTGTCGATGCAGTG
CTCCTGCCGCACCATCATGGGGCAGGAGGTACAGAAACTATCACGCGAGTGAGCGCAGGCGCCGTTGCATGGGTACCGCT
TGTGCGTGTACGCAACCTAGTGCGCACTGCAGGTATCCTCAAGCGTTCAGGATTCTGGCTATACGGTGCTGATGTAGCAG
GAGAAGCAATAGGCGCCCGTACTTTTCCTCCTAAGACAGCGCTTGTGTTAGGCAACGAGGGGCACGGCGTTTCGCCGTTG
CTGCGCACGCACTGCGACGCACTCATCTCTATCCCAACGCAGGGGAATGTAGACAGTCTGAACGTGTCGGTTGCCGCAGG
TATTCTGTTATACGAAATACGCCGGAGTCAGCAGTCTCCCTACTCCGTACAAAGGCAAAACGAAATGAACGCTCAATGA

Upstream 100 bases:

>100_bases
TGCACATTGCCGATACAATTGTGCAGTCGCTCCTTCCAGTCAGTAGCGCTATTGCAAAGCGCGCCTGGCTGCGATACAAG
GAGGAGAACACTTACTCCGT

Downstream 100 bases:

>100_bases
AAACACCCAGGGCATCTTCGCATCTTTAATTCATATTGCATCTTTCACCCCATTGCGTTAGCCTGAGGGAGTCTCTACGC
ACGCGGTACGCGGAGGACCC

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAARGIRITHTTCAVLDKLARSL
PPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERTLLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAV
LLPHHHGAGGTETITRVSAGAVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGARTFPPKTALVLGNEGHGVSPL
LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSPYSVQRQNEMNAQ

Sequences:

>Translated_292_residues
MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAARGIRITHTTCAVLDKLARSL
PPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERTLLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAV
LLPHHHGAGGTETITRVSAGAVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGARTFPPKTALVLGNEGHGVSPL
LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSPYSVQRQNEMNAQ
>Mature_292_residues
MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAARGIRITHTTCAVLDKLARSL
PPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERTLLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAV
LLPHHHGAGGTETITRVSAGAVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGARTFPPKTALVLGNEGHGVSPL
LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSPYSVQRQNEMNAQ

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=241, Percent_Identity=31.1203319502075, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI110825988, Length=150, Percent_Identity=30, Blast_Score=72, Evalue=7e-13,
Organism=Escherichia coli, GI1790623, Length=164, Percent_Identity=45.1219512195122, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1790083, Length=172, Percent_Identity=30.2325581395349, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788935, Length=152, Percent_Identity=29.6052631578947, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17555908, Length=277, Percent_Identity=30.3249097472924, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324775, Length=167, Percent_Identity=31.7365269461078, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 31207; Mature: 31207

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAA
CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RGIRITHTTCAVLDKLARSLPPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERT
CCEEEEHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
LLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAG
HHHHHHHHHHHHHHHEEHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHCC
AVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGARTFPPKTALVLGNEGHGVSPL
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCEEEEECCCCCCCCHH
LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSPYSVQRQNEMNAQ
HHHHCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MVISGLRAIEEFLRAQPAALEGLHAGGKNSKTQQSCVRVLTLYYAAENARIKRLLGMAAA
CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RGIRITHTTCAVLDKLARSLPPALRDHRGILAVLSSPSATPQGSHTRKKRPAVDSSQERT
CCEEEEHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHH
LLHALATHTHALVLVLDAITDPHNVGAIVRSADQFSVDAVLLPHHHGAGGTETITRVSAG
HHHHHHHHHHHHHHHEEHHCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHCC
AVAWVPLVRVRNLVRTAGILKRSGFWLYGADVAGEAIGARTFPPKTALVLGNEGHGVSPL
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHCCCCCCCCEEEEECCCCCCCCHH
LRTHCDALISIPTQGNVDSLNVSVAAGILLYEIRRSQQSPYSVQRQNEMNAQ
HHHHCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]