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The map label for this gene is y4oP

Identifier: 189025308

GI number: 189025308

Start: 80931

End: 82340

Strand: Direct

Name: y4oP

Synonym: TPASS_0074

Alternate gene names: NA

Gene position: 80931-82340 (Clockwise)

Preceding gene: 189025306

Following gene: 189025309

Centisome position: 7.1

GC content: 55.11

Gene sequence:

>1410_bases
ATGTGCTTTGCGCGGAGTCGGTTGTTTTCCCGTGGTGCGGTGGGCACGGTGTGCTGCACTGTGTTGTTTCTCGCGTGTCG
TGTGCGCACTCCTTCTTCCGTGCCTCTGCGTTCTGGATCGGTCCGTGCCGCAGTACCCGAGGCCACATCCTTTCACTGGC
GGCGCTATGCGGGTACGCGCCTGCGCGTGTGTTTTCCGTACCATGCTTCTTATCGCGCACTCAAAGCGATTGTTCCGGAA
TTCGAGTCACTGACGGGTATCGCTGTTGAAATTGACTGGCTTCAGTATGCGCGCATGCACGATAAGCAGGTACTCGAACT
GAGTAAACCGCGTGGTGACTATGACCTTATCGCTATGCTGTGTACGTGGAAGACGGAGTACGCGTCGCGCGGGCTACTCC
GGTCACTCGATTCGTTTTTTCAAAATCCTTCCCTGTGTATGCCGCATTACGATTTTGAAGATCTCATTCCTGTGTACGTA
GAGACAATCGGGTATGTAGGTGGACGCAAACCCTGGCTTGGGGGTCCGGGTGCGTTTTTGTGCGCCGTGCCCTTTGGAGC
GGAGACGAGTATACTTGCCTACCGCAAAGATATCTTCCACAAGTACCGCATCAAGGTACCAGAAAATTATGATGAGCTTT
TGGATGCCTGTAAGAGACTGCGTGAACGCGCGCAACTATACGGTCTTGCAAGCCGCGGCGCTTCAGGACAGCAGGCGTTG
CACGCATATTTACTACACGCCGCACCCTTTGGTGCTAAGGTGTTGGACGATTCTTTAGTTCCTGCATTCCATCGTTCGCG
TTCTATCGCCACATTACGGTGGATGCAAGAAATGTTCGCGTACGGTCCACCGGGTATGGCGAGTTTTGCCCAAAACGAAG
CATTGCAGGCCTTTTTGCAAGGGCAGACGGGGATGTACTTGGATACCAATATGATTGGACCGTTAGTTCGTGATCCGACA
CGCTCAGCCATACGCCCGCACCATGTGGGATTTGCGTTGCACCCGATGGCGCAGGTGCGTGCAGGAGAAGTTGGCGGCTT
CGGGCTTGCAATTCCACACAATAGTGCTGCGCCCGAAGCAGCGTTCTTGCTTTTGCAGTGGATTACGGCGCCGCAAACAG
GACGGCGAGTGGTGGAACAGGGTGCGCTACCATTCCGCCAGTCGCAGCTTGCGGACCGCGCATTGCGTGCACGTTTTGCT
GAGTTTGAGGTATTAGAGCGTCAGCTTGCACATTGCGATCCAGATTGGCGTCCTATCGTGCCTACCTGGGGGGAGTTGGG
AACCCTTTTGGGAATTGGGATAAATGAGGTGCTCACCGGTGTGAGTGAGCCAGAGGAAGCGATGAGCGCATTAGTGCTGC
CGGCACGTCGTATTCTCCGTCGTCACGCGCACGCACGTTATGTGCCGTAA

Upstream 100 bases:

>100_bases
TTTGTAGGACTGCGTAGGGGCGTGCGTCGATTGGTGTGGTGCTATGTGTCGTGCTGGTTTGATGTATCAGGACTGGGGTG
TGAGGGGAAAAACGGACAGG

Downstream 100 bases:

>100_bases
AAAGTCTCTTCTTCTTGGGGGAAGAGAGGGCAGAAAAGATGCTGGATATGAGCGGAAACAGAATGACGTGTTCTATCTGT
GGAGCGCGTTACGTTGGGTA

Product: sugar ABC transporter, periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MCFARSRLFSRGAVGTVCCTVLFLACRVRTPSSVPLRSGSVRAAVPEATSFHWRRYAGTRLRVCFPYHASYRALKAIVPE
FESLTGIAVEIDWLQYARMHDKQVLELSKPRGDYDLIAMLCTWKTEYASRGLLRSLDSFFQNPSLCMPHYDFEDLIPVYV
ETIGYVGGRKPWLGGPGAFLCAVPFGAETSILAYRKDIFHKYRIKVPENYDELLDACKRLRERAQLYGLASRGASGQQAL
HAYLLHAAPFGAKVLDDSLVPAFHRSRSIATLRWMQEMFAYGPPGMASFAQNEALQAFLQGQTGMYLDTNMIGPLVRDPT
RSAIRPHHVGFALHPMAQVRAGEVGGFGLAIPHNSAAPEAAFLLLQWITAPQTGRRVVEQGALPFRQSQLADRALRARFA
EFEVLERQLAHCDPDWRPIVPTWGELGTLLGIGINEVLTGVSEPEEAMSALVLPARRILRRHAHARYVP

Sequences:

>Translated_469_residues
MCFARSRLFSRGAVGTVCCTVLFLACRVRTPSSVPLRSGSVRAAVPEATSFHWRRYAGTRLRVCFPYHASYRALKAIVPE
FESLTGIAVEIDWLQYARMHDKQVLELSKPRGDYDLIAMLCTWKTEYASRGLLRSLDSFFQNPSLCMPHYDFEDLIPVYV
ETIGYVGGRKPWLGGPGAFLCAVPFGAETSILAYRKDIFHKYRIKVPENYDELLDACKRLRERAQLYGLASRGASGQQAL
HAYLLHAAPFGAKVLDDSLVPAFHRSRSIATLRWMQEMFAYGPPGMASFAQNEALQAFLQGQTGMYLDTNMIGPLVRDPT
RSAIRPHHVGFALHPMAQVRAGEVGGFGLAIPHNSAAPEAAFLLLQWITAPQTGRRVVEQGALPFRQSQLADRALRARFA
EFEVLERQLAHCDPDWRPIVPTWGELGTLLGIGINEVLTGVSEPEEAMSALVLPARRILRRHAHARYVP
>Mature_469_residues
MCFARSRLFSRGAVGTVCCTVLFLACRVRTPSSVPLRSGSVRAAVPEATSFHWRRYAGTRLRVCFPYHASYRALKAIVPE
FESLTGIAVEIDWLQYARMHDKQVLELSKPRGDYDLIAMLCTWKTEYASRGLLRSLDSFFQNPSLCMPHYDFEDLIPVYV
ETIGYVGGRKPWLGGPGAFLCAVPFGAETSILAYRKDIFHKYRIKVPENYDELLDACKRLRERAQLYGLASRGASGQQAL
HAYLLHAAPFGAKVLDDSLVPAFHRSRSIATLRWMQEMFAYGPPGMASFAQNEALQAFLQGQTGMYLDTNMIGPLVRDPT
RSAIRPHHVGFALHPMAQVRAGEVGGFGLAIPHNSAAPEAAFLLLQWITAPQTGRRVVEQGALPFRQSQLADRALRARFA
EFEVLERQLAHCDPDWRPIVPTWGELGTLLGIGINEVLTGVSEPEEAMSALVLPARRILRRHAHARYVP

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 52369; Mature: 52369

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFARSRLFSRGAVGTVCCTVLFLACRVRTPSSVPLRSGSVRAAVPEATSFHWRRYAGTR
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCE
LRVCFPYHASYRALKAIVPEFESLTGIAVEIDWLQYARMHDKQVLELSKPRGDYDLIAML
EEEEECCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
CTWKTEYASRGLLRSLDSFFQNPSLCMPHYDFEDLIPVYVETIGYVGGRKPWLGGPGAFL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
CAVPFGAETSILAYRKDIFHKYRIKVPENYDELLDACKRLRERAQLYGLASRGASGQQAL
EEECCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
HAYLLHAAPFGAKVLDDSLVPAFHRSRSIATLRWMQEMFAYGPPGMASFAQNEALQAFLQ
HHHHHHHCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GQTGMYLDTNMIGPLVRDPTRSAIRPHHVGFALHPMAQVRAGEVGGFGLAIPHNSAAPEA
CCCCCEEECCCCCCHHCCCCHHCCCCCCCCEEECCHHHHHCCCCCCEEEECCCCCCCHHH
AFLLLQWITAPQTGRRVVEQGALPFRQSQLADRALRARFAEFEVLERQLAHCDPDWRPIV
HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PTWGELGTLLGIGINEVLTGVSEPEEAMSALVLPARRILRRHAHARYVP
CCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCFARSRLFSRGAVGTVCCTVLFLACRVRTPSSVPLRSGSVRAAVPEATSFHWRRYAGTR
CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCHHHHHHHHCCCE
LRVCFPYHASYRALKAIVPEFESLTGIAVEIDWLQYARMHDKQVLELSKPRGDYDLIAML
EEEEECCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
CTWKTEYASRGLLRSLDSFFQNPSLCMPHYDFEDLIPVYVETIGYVGGRKPWLGGPGAFL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
CAVPFGAETSILAYRKDIFHKYRIKVPENYDELLDACKRLRERAQLYGLASRGASGQQAL
EEECCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
HAYLLHAAPFGAKVLDDSLVPAFHRSRSIATLRWMQEMFAYGPPGMASFAQNEALQAFLQ
HHHHHHHCCCCHHHHHCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GQTGMYLDTNMIGPLVRDPTRSAIRPHHVGFALHPMAQVRAGEVGGFGLAIPHNSAAPEA
CCCCCEEECCCCCCHHCCCCHHCCCCCCCCEEECCHHHHHCCCCCCEEEECCCCCCCHHH
AFLLLQWITAPQTGRRVVEQGALPFRQSQLADRALRARFAEFEVLERQLAHCDPDWRPIV
HHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PTWGELGTLLGIGINEVLTGVSEPEEAMSALVLPARRILRRHAHARYVP
CCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]