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The map label for this gene is mcp1 [H]

Identifier: 189025274

GI number: 189025274

Start: 47588

End: 49381

Strand: Direct

Name: mcp1 [H]

Synonym: TPASS_0040

Alternate gene names: 189025274

Gene position: 47588-49381 (Clockwise)

Preceding gene: 189025273

Following gene: 189025275

Centisome position: 4.18

GC content: 54.29

Gene sequence:

>1794_bases
ATGACAATTGGTTTTGCGTTTACGATATTCGCGTATTACCTGGCAATGTTTTGTTTCCGGCGATTGTCCTCCTGCAGCAG
AAAGTCTTATGCGGAGAATGAGCGGGCAGATACTGCAGGGGTGTTGGGAGTGAGCGAAAAGAGCCTGTATGCGTGCTCGC
TTTTTTCGTTGCTGATTGTGGTTCGCTTGCTGCTGACGGGGAATGCGTTTCTGCCACGCTTGATCACGATTGGGTGGGAC
CCGATGGTGCGGTTAGAATACCTGACCCTGGCGTTCTCGGGGGTGTCCTGTTTGTACTATCTTTCTACGTTGTACCCTGG
GCTTGTGAATCAGAGTTTTGTGGTGGCGTTTGGTGCAGAGGGGCTTGCGTACGCGGTGATTATCCTTTTGCTTCCCCCTG
CCTCTTTTGCCCGATTACTTCCCTTACAGCAACTGTTCGTATTGCTTTTGCTGGGTATTGTGCTCTGGGTGATGTGCAAA
GTCTTGTACCGCAAAAAGCGTGGCGCGGTGCCTTTGAGTATGGGGGTGCTGGTGTTAGGCGTCACAGCGCTGCACGATGT
GCTCCTGGCTGTAGGGGTACTGTCAGGAGCTCCCCTGTTGATTTTTGGGTTTGTTGGATTTTTGGTTACGCAAACTGCGC
TCATCGAGTGGCAGGTTGTTTTGGATGGGCGGACTGCGCAGCGGCTTTCTCAGGACTTATCTTCCTCGTCGCAGCGTTTG
GAGCGGTTGTTTGGTGAAGTTCGTCGCACCGCGCAGGAGCTTTCGCACAATGAACAGAATCTGACCGAGACCATGGATCG
TGCAGAGCAGGTAGTGCAAGACTTGACGCGCTACACGGGTGCTGTACGCGAAGAGTTAGCGGTGCAGGGGGAAGGGTTTT
CTCAAACGCGTGTGGTGAATGAAGAGCTTGGTTCCTCCTTGCGAGAGTTGGATGAACAAATGGAAGCACAAGGGGAACGT
GCACGAGAAGCGCTTGAGGCAGTTGAGCGTCTCGGGAGTACGGTGCACAACTTGCGGGGTAAGTTTTCTGCAGTGCACGC
AGATTTTGAGGCAATTACCACGGCAAGTAAAACCGGCAAGGAATGCGTTGGCCGCATGATGGAGGTGATCGAAGAAATTA
CGAGTCGGTCGCGTGGTTTGGCGGTGACGAATGCGCTGGTGGTAGATATTTCAGGACGGACGAATTTACTTGCAATGAAC
GCAGCGATTGAGGCTGCACATGCAGGTGACGCAGGACGCGGTTTTGCGGTGGTAGCGGGGGAAATCCGCTCCCTGGCAGC
GCGAACAGCAGCTGAGTCTGGTGCAACGGGAAAAATGTTAAAGGAAATAGAGGCAGTGATTGGAGAATCAGGGCACGCGT
CGGCAGGAGTTGCCCAGAGTTTTACAGACATTAGAGGAAAGGTGGACGGTTTCAGCACCATCCTTGCGGATATTTCCGGT
GCCGTTCAGGTGGTGGGAGAAGAAAATGAGCGTACCGTTGAGCGTATGCGCACGGTGACAGGGCAGTTATGTACGGCGCG
TGAGCAGGGGAAAGTGATAGCAGAGGTATGCACGCGAGGTGCAGCTCATGCTGAGCGGTTGACACGAGATGCGCAAAAGG
TGTGCGCAGAGGTCGAGACGATGATCGGTAACGTGGAAGTGCTCACGGAAGTGGTTGCACGAACGCGGGCAGTTGAGTTG
CATACGCGGGAGGTAATCGCCCGCCTGAGTGGGCTCTTGGACAGCAATATACCAACGGACGAACCTCAGTCGGAATACAG
GCACGGGGGGGGGGTAGGAGGAGCCTACAGGTAG

Upstream 100 bases:

>100_bases
CAATTACCACAGTCTAAGACCGGGCATTGTTGGTGAAGTTCACTTGGGGTCTGTTTCGCGCGTTCGTACGCGCGTGCTGC
GCAAGGACGTGCTTGAGGCG

Downstream 100 bases:

>100_bases
CGTGAACCGCATGCTGTCTCTGAGCGTGCAGTCTCAGCGAGCGCCGGCCTCCCCCTCCCCCTATGGACTGAAGATTGACA
AAAGGGTTTCGCCTGACTAT

Product: methyl-accepting chemotaxis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 597; Mature: 596

Protein sequence:

>597_residues
MTIGFAFTIFAYYLAMFCFRRLSSCSRKSYAENERADTAGVLGVSEKSLYACSLFSLLIVVRLLLTGNAFLPRLITIGWD
PMVRLEYLTLAFSGVSCLYYLSTLYPGLVNQSFVVAFGAEGLAYAVIILLLPPASFARLLPLQQLFVLLLLGIVLWVMCK
VLYRKKRGAVPLSMGVLVLGVTALHDVLLAVGVLSGAPLLIFGFVGFLVTQTALIEWQVVLDGRTAQRLSQDLSSSSQRL
ERLFGEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYTGAVREELAVQGEGFSQTRVVNEELGSSLRELDEQMEAQGER
AREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGKECVGRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMN
AAIEAAHAGDAGRGFAVVAGEIRSLAARTAAESGATGKMLKEIEAVIGESGHASAGVAQSFTDIRGKVDGFSTILADISG
AVQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAEVETMIGNVEVLTEVVARTRAVEL
HTREVIARLSGLLDSNIPTDEPQSEYRHGGGVGGAYR

Sequences:

>Translated_597_residues
MTIGFAFTIFAYYLAMFCFRRLSSCSRKSYAENERADTAGVLGVSEKSLYACSLFSLLIVVRLLLTGNAFLPRLITIGWD
PMVRLEYLTLAFSGVSCLYYLSTLYPGLVNQSFVVAFGAEGLAYAVIILLLPPASFARLLPLQQLFVLLLLGIVLWVMCK
VLYRKKRGAVPLSMGVLVLGVTALHDVLLAVGVLSGAPLLIFGFVGFLVTQTALIEWQVVLDGRTAQRLSQDLSSSSQRL
ERLFGEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYTGAVREELAVQGEGFSQTRVVNEELGSSLRELDEQMEAQGER
AREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGKECVGRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMN
AAIEAAHAGDAGRGFAVVAGEIRSLAARTAAESGATGKMLKEIEAVIGESGHASAGVAQSFTDIRGKVDGFSTILADISG
AVQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAEVETMIGNVEVLTEVVARTRAVEL
HTREVIARLSGLLDSNIPTDEPQSEYRHGGGVGGAYR
>Mature_596_residues
TIGFAFTIFAYYLAMFCFRRLSSCSRKSYAENERADTAGVLGVSEKSLYACSLFSLLIVVRLLLTGNAFLPRLITIGWDP
MVRLEYLTLAFSGVSCLYYLSTLYPGLVNQSFVVAFGAEGLAYAVIILLLPPASFARLLPLQQLFVLLLLGIVLWVMCKV
LYRKKRGAVPLSMGVLVLGVTALHDVLLAVGVLSGAPLLIFGFVGFLVTQTALIEWQVVLDGRTAQRLSQDLSSSSQRLE
RLFGEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYTGAVREELAVQGEGFSQTRVVNEELGSSLRELDEQMEAQGERA
REALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGKECVGRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMNA
AIEAAHAGDAGRGFAVVAGEIRSLAARTAAESGATGKMLKEIEAVIGESGHASAGVAQSFTDIRGKVDGFSTILADISGA
VQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAEVETMIGNVEVLTEVVARTRAVELH
TREVIARLSGLLDSNIPTDEPQSEYRHGGGVGGAYR

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=308, Percent_Identity=25.6493506493506, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI2367378, Length=199, Percent_Identity=31.1557788944724, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1788194, Length=269, Percent_Identity=30.4832713754647, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788195, Length=250, Percent_Identity=29.6, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787690, Length=150, Percent_Identity=35.3333333333333, Blast_Score=74, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 64619; Mature: 64488

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIGFAFTIFAYYLAMFCFRRLSSCSRKSYAENERADTAGVLGVSEKSLYACSLFSLLIV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEECCCCHHHHHHHHHHHHHH
VRLLLTGNAFLPRLITIGWDPMVRLEYLTLAFSGVSCLYYLSTLYPGLVNQSFVVAFGAE
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GLAYAVIILLLPPASFARLLPLQQLFVLLLLGIVLWVMCKVLYRKKRGAVPLSMGVLVLG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VTALHDVLLAVGVLSGAPLLIFGFVGFLVTQTALIEWQVVLDGRTAQRLSQDLSSSSQRL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHH
ERLFGEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYTGAVREELAVQGEGFSQTRVVN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
EELGSSLRELDEQMEAQGERAREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ECVGRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMNAAIEAAHAGDAGRGFAVVAG
HHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHCCCCCCCCHHHHHH
EIRSLAARTAAESGATGKMLKEIEAVIGESGHASAGVAQSFTDIRGKVDGFSTILADISG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
AVQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAEVET
HHHEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MIGNVEVLTEVVARTRAVELHTREVIARLSGLLDSNIPTDEPQSEYRHGGGVGGAYR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TIGFAFTIFAYYLAMFCFRRLSSCSRKSYAENERADTAGVLGVSEKSLYACSLFSLLIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCEECCCCHHHHHHHHHHHHHH
VRLLLTGNAFLPRLITIGWDPMVRLEYLTLAFSGVSCLYYLSTLYPGLVNQSFVVAFGAE
HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GLAYAVIILLLPPASFARLLPLQQLFVLLLLGIVLWVMCKVLYRKKRGAVPLSMGVLVLG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VTALHDVLLAVGVLSGAPLLIFGFVGFLVTQTALIEWQVVLDGRTAQRLSQDLSSSSQRL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHHH
ERLFGEVRRTAQELSHNEQNLTETMDRAEQVVQDLTRYTGAVREELAVQGEGFSQTRVVN
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
EELGSSLRELDEQMEAQGERAREALEAVERLGSTVHNLRGKFSAVHADFEAITTASKTGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ECVGRMMEVIEEITSRSRGLAVTNALVVDISGRTNLLAMNAAIEAAHAGDAGRGFAVVAG
HHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEHHHHHHHCCCCCCCCHHHHHH
EIRSLAARTAAESGATGKMLKEIEAVIGESGHASAGVAQSFTDIRGKVDGFSTILADISG
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
AVQVVGEENERTVERMRTVTGQLCTAREQGKVIAEVCTRGAAHAERLTRDAQKVCAEVET
HHHEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MIGNVEVLTEVVARTRAVELHTREVIARLSGLLDSNIPTDEPQSEYRHGGGVGGAYR
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2496104 [H]