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The map label for this gene is yebA [H]

Identifier: 188587513

GI number: 188587513

Start: 3154874

End: 3155818

Strand: Reverse

Name: yebA [H]

Synonym: Nther_2924

Alternate gene names: 188587513

Gene position: 3155818-3154874 (Counterclockwise)

Preceding gene: 188587514

Following gene: 188587512

Centisome position: 99.69

GC content: 40.32

Gene sequence:

>945_bases
ATGAGAAAAACCAAACCCAGAAGTAACACCTTTACAATCATGTTGATTCCGCACTCTGAAAAATCTAGTTTTTCTATCAA
ACTACCTATATATGTATTCCAAGGTCTAGCTTTTGTACTTGTGTTATCAGTTGTCCTAGTCATCAATATGGTGGGCAATT
ATATGAGTATGACGGATAAAGCTACTGAAGCAGTTGAACTTAGAGAAGAAAATCGAAAACAACAAGAAAAAATTGATAAA
TTTGCACAAAAAATTGAGTCCTTTGAAGATGAGATGAAACAAATTGCCAAGACTGAACAGAGAGTAAGGGAAATACTAGA
CATGGAAGAAGTTGAGGGGGACTCTTTGTTGGCCCAAGAGGGGGGAAATGAATCTCAATCAGAAAAAAAGATTCTTAGCT
CGGGACAGGACTTAGACGATAAAGCTTTTCAAGCATCAAGTACTGCCGAACAAGCTGGTTATACAATACGCAAACTAGCG
GGTCAATTACCTGACAAACAAATTGACATGGAGGAACTGAAGGAAGCTGCAGTGGAAAAAGAAGAAGAAAGGATGCATAC
TCCTTCTAAACCACCAGTTAATGGTCGTATCACATCAGGGTTTGGAACTAGGTCAAATCCACTGACTGGTCGTAGAGAAT
TCCATGAAGGTGTTGATATAGCTGCGAGCCACGGTACTCCTGTTCGTGCCCCGGCCAACGGACAAGTCGTTTATCGAAGC
TACCGTGGTGGATATGGGAATTTGATTATAATTGATCATGGATATGGGTATACAACCTATTACGCTCATTTATCTGACTT
TAATGTCAGCCGAGGGGAACAGGTAGAGAGTGGAGATATAATCGGATATGTAGGAAATACAGGTAATAGCACAGCTCCTC
ATTTACATTATGAAGTGCATGTGAACAATTCTCCTGAGAATCCCCGGGAATACATGACGGAATAG

Upstream 100 bases:

>100_bases
CAATTATTTTTGACACAAACGTTGCATCCACATGGTCCTTAATTACACTACAGATTAACAATAAAAAATTTTGATAGCCG
GGGAAAAAGGGTGGTGAACT

Downstream 100 bases:

>100_bases
CTAGTCCATAAGGAGGAATAATATGTTCAAAAAAAAGCAGTCTCCCCAACAAGATAAAGTGGATACTATTATAGGGCATG
GAACAGAATTTAAAGGGAAT

Product: Peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRKTKPRSNTFTIMLIPHSEKSSFSIKLPIYVFQGLAFVLVLSVVLVINMVGNYMSMTDKATEAVELREENRKQQEKIDK
FAQKIESFEDEMKQIAKTEQRVREILDMEEVEGDSLLAQEGGNESQSEKKILSSGQDLDDKAFQASSTAEQAGYTIRKLA
GQLPDKQIDMEELKEAAVEKEEERMHTPSKPPVNGRITSGFGTRSNPLTGRREFHEGVDIAASHGTPVRAPANGQVVYRS
YRGGYGNLIIIDHGYGYTTYYAHLSDFNVSRGEQVESGDIIGYVGNTGNSTAPHLHYEVHVNNSPENPREYMTE

Sequences:

>Translated_314_residues
MRKTKPRSNTFTIMLIPHSEKSSFSIKLPIYVFQGLAFVLVLSVVLVINMVGNYMSMTDKATEAVELREENRKQQEKIDK
FAQKIESFEDEMKQIAKTEQRVREILDMEEVEGDSLLAQEGGNESQSEKKILSSGQDLDDKAFQASSTAEQAGYTIRKLA
GQLPDKQIDMEELKEAAVEKEEERMHTPSKPPVNGRITSGFGTRSNPLTGRREFHEGVDIAASHGTPVRAPANGQVVYRS
YRGGYGNLIIIDHGYGYTTYYAHLSDFNVSRGEQVESGDIIGYVGNTGNSTAPHLHYEVHVNNSPENPREYMTE
>Mature_314_residues
MRKTKPRSNTFTIMLIPHSEKSSFSIKLPIYVFQGLAFVLVLSVVLVINMVGNYMSMTDKATEAVELREENRKQQEKIDK
FAQKIESFEDEMKQIAKTEQRVREILDMEEVEGDSLLAQEGGNESQSEKKILSSGQDLDDKAFQASSTAEQAGYTIRKLA
GQLPDKQIDMEELKEAAVEKEEERMHTPSKPPVNGRITSGFGTRSNPLTGRREFHEGVDIAASHGTPVRAPANGQVVYRS
YRGGYGNLIIIDHGYGYTTYYAHLSDFNVSRGEQVESGDIIGYVGNTGNSTAPHLHYEVHVNNSPENPREYMTE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=48.2456140350877, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=34.020618556701, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789099, Length=125, Percent_Identity=35.2, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082174, Length=99, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35172; Mature: 35172

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTKPRSNTFTIMLIPHSEKSSFSIKLPIYVFQGLAFVLVLSVVLVINMVGNYMSMTDK
CCCCCCCCCEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATEAVELREENRKQQEKIDKFAQKIESFEDEMKQIAKTEQRVREILDMEEVEGDSLLAQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHC
GGNESQSEKKILSSGQDLDDKAFQASSTAEQAGYTIRKLAGQLPDKQIDMEELKEAAVEK
CCCCCHHHHHHHHCCCCCCHHHHHCCCHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHCH
EEERMHTPSKPPVNGRITSGFGTRSNPLTGRREFHEGVDIAASHGTPVRAPANGQVVYRS
HHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCEEEEE
YRGGYGNLIIIDHGYGYTTYYAHLSDFNVSRGEQVESGDIIGYVGNTGNSTAPHLHYEVH
CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEE
VNNSPENPREYMTE
ECCCCCCHHHHCCC
>Mature Secondary Structure
MRKTKPRSNTFTIMLIPHSEKSSFSIKLPIYVFQGLAFVLVLSVVLVINMVGNYMSMTDK
CCCCCCCCCEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATEAVELREENRKQQEKIDKFAQKIESFEDEMKQIAKTEQRVREILDMEEVEGDSLLAQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHC
GGNESQSEKKILSSGQDLDDKAFQASSTAEQAGYTIRKLAGQLPDKQIDMEELKEAAVEK
CCCCCHHHHHHHHCCCCCCHHHHHCCCHHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHCH
EEERMHTPSKPPVNGRITSGFGTRSNPLTGRREFHEGVDIAASHGTPVRAPANGQVVYRS
HHHHCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCEEECCCCCCCCCCCCCEEEEE
YRGGYGNLIIIDHGYGYTTYYAHLSDFNVSRGEQVESGDIIGYVGNTGNSTAPHLHYEVH
CCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEE
VNNSPENPREYMTE
ECCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]