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The map label for this gene is yebA [C]

Identifier: 188587495

GI number: 188587495

Start: 3137335

End: 3138741

Strand: Reverse

Name: yebA [C]

Synonym: Nther_2905

Alternate gene names: 188587495

Gene position: 3138741-3137335 (Counterclockwise)

Preceding gene: 188587497

Following gene: 188587494

Centisome position: 99.15

GC content: 37.1

Gene sequence:

>1407_bases
ATGGAAGATAAATCAGGAAATGACAGTTTAAAAGAAAGTTTCAAGAGTATAATGGCTCCTAAAAAACTATTTTGTGGATT
CGTGGCAGTACTTACTTTAGGAGCTGGCTTATATACATATTCCCAAACAAAAGAATTCAATGCAGGGTATGTAAATACCT
TATATATACAGAATGAAGAAATAGCAGTAATTGATAGAGAGCAAAGGGATAAAATTGAGGAAATTTTAAAGGAAATTAAG
TCAGAAGTAGAGGACGAATACGATATTGATAATTTATATATTGCAGAAGAACTTGAAATTGAAGAAGAACATAGACAAAC
TAGTCCTACTGACGATATGATTGAAATCAAAGAAAAGCTCAAAGAAAACTTGACTTTTCACACCAGAGGTTACGCTTTAT
ACGTGGATAATGAGAAAATAGGGGTTATTAGAGAAGAGCTCTCTCCTGATGAGATAGCAGAAGATGTGGCTCAACACTTT
GTAGATGGTGATATTGAAGAAGTTGAAATTGAAGAAGATATTAGAGTGGAAACTAAAGAGATTTATCCTGGTAAATTAAT
AGACAAGGATAGTGCTATAAGTATTATTTTAAATGGGACTGAGTACACAGAAACTTATGAAGTTCAATCAGGGGACTCCC
TTTGGACTATTGCCGATGAAACCGATAAAACAGTAAGTCAATTGAGGGAGGCAAATCCTCAGCTTGATGAAGATGAAATG
TTGCGCCCTGGTGAAGAGATAGAGTTAGTGAAAACCGAGAGTTATGTCAATGTGCGTACTACTAAAAAACGAAAGGTTAA
AGAATCAATTTCCTATGATACAGAATATCGAACTGATTCTTCTCTTTGGTGGGATGAATCTAAGGTAATGGAACCAGGAA
ATGTAGGGAAAAGGGAAGTAGAATATAGAGTCCATAAAAAAAACGGGCAAGAAAAGGAACAAGAAGTTTTAAGAAAAGAA
ATATTAGAAGAACCTGAAAATCAAGTAATTGTTAGAGGTTCAGCGCAAAGGCCTAGAGCTGAAGGTGATAGGTTTTTATT
TCCTATAAACCCTTCTAGTGGACGTTTCACCTCAGGTTATGGCCCTCGTGGAGCAGGCTTTCATAGTGGTGTTGATTTTG
CTGCTCCTCGGGGAACACCAGTTAGGGCAGCTGCAAGCGGAACAGTTACTTTTTCAGGTTATAAAGGTGGTTACGGAAAT
CTAATTGTAATAGAACATTCTGGCGGTTATGAGACCTATTACGCTCATAATTCTGAAAATCACGTTCAAGAAGGGCAACA
GGTTAACAGAGGAGATGTAATTGGCCTTGTAGGTAGTACAGGCCGTAGTACCGGGGCACATCTTCATTTTGAAATTCACC
GACATGGGAGCCATACTAATCCGTTAAATTACTTTGCACCTCAATAA

Upstream 100 bases:

>100_bases
TGAAATTGTAAAAAATTTAAAGAAGGTATTTTTGCATTTCTGAAGAATAAAAGTTGACGGGTCTGAGTATACTAGGATAA
CAGTTTAGGGGAGGGATATT

Downstream 100 bases:

>100_bases
TAAAAATAAATACCCAAACTAGGATTTTTGTAAAGTGATTTAGGTGAACAGGCTCTACCTTTTATTGGTAGGGCCTTGTT
TATTTGTAATCATTTTAATT

Product: Peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MEDKSGNDSLKESFKSIMAPKKLFCGFVAVLTLGAGLYTYSQTKEFNAGYVNTLYIQNEEIAVIDREQRDKIEEILKEIK
SEVEDEYDIDNLYIAEELEIEEEHRQTSPTDDMIEIKEKLKENLTFHTRGYALYVDNEKIGVIREELSPDEIAEDVAQHF
VDGDIEEVEIEEDIRVETKEIYPGKLIDKDSAISIILNGTEYTETYEVQSGDSLWTIADETDKTVSQLREANPQLDEDEM
LRPGEEIELVKTESYVNVRTTKKRKVKESISYDTEYRTDSSLWWDESKVMEPGNVGKREVEYRVHKKNGQEKEQEVLRKE
ILEEPENQVIVRGSAQRPRAEGDRFLFPINPSSGRFTSGYGPRGAGFHSGVDFAAPRGTPVRAAASGTVTFSGYKGGYGN
LIVIEHSGGYETYYAHNSENHVQEGQQVNRGDVIGLVGSTGRSTGAHLHFEIHRHGSHTNPLNYFAPQ

Sequences:

>Translated_468_residues
MEDKSGNDSLKESFKSIMAPKKLFCGFVAVLTLGAGLYTYSQTKEFNAGYVNTLYIQNEEIAVIDREQRDKIEEILKEIK
SEVEDEYDIDNLYIAEELEIEEEHRQTSPTDDMIEIKEKLKENLTFHTRGYALYVDNEKIGVIREELSPDEIAEDVAQHF
VDGDIEEVEIEEDIRVETKEIYPGKLIDKDSAISIILNGTEYTETYEVQSGDSLWTIADETDKTVSQLREANPQLDEDEM
LRPGEEIELVKTESYVNVRTTKKRKVKESISYDTEYRTDSSLWWDESKVMEPGNVGKREVEYRVHKKNGQEKEQEVLRKE
ILEEPENQVIVRGSAQRPRAEGDRFLFPINPSSGRFTSGYGPRGAGFHSGVDFAAPRGTPVRAAASGTVTFSGYKGGYGN
LIVIEHSGGYETYYAHNSENHVQEGQQVNRGDVIGLVGSTGRSTGAHLHFEIHRHGSHTNPLNYFAPQ
>Mature_468_residues
MEDKSGNDSLKESFKSIMAPKKLFCGFVAVLTLGAGLYTYSQTKEFNAGYVNTLYIQNEEIAVIDREQRDKIEEILKEIK
SEVEDEYDIDNLYIAEELEIEEEHRQTSPTDDMIEIKEKLKENLTFHTRGYALYVDNEKIGVIREELSPDEIAEDVAQHF
VDGDIEEVEIEEDIRVETKEIYPGKLIDKDSAISIILNGTEYTETYEVQSGDSLWTIADETDKTVSQLREANPQLDEDEM
LRPGEEIELVKTESYVNVRTTKKRKVKESISYDTEYRTDSSLWWDESKVMEPGNVGKREVEYRVHKKNGQEKEQEVLRKE
ILEEPENQVIVRGSAQRPRAEGDRFLFPINPSSGRFTSGYGPRGAGFHSGVDFAAPRGTPVRAAASGTVTFSGYKGGYGN
LIVIEHSGGYETYYAHNSENHVQEGQQVNRGDVIGLVGSTGRSTGAHLHFEIHRHGSHTNPLNYFAPQ

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=119, Percent_Identity=41.1764705882353, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082174, Length=167, Percent_Identity=35.9281437125749, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=41.1764705882353, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI87082297, Length=96, Percent_Identity=38.5416666666667, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 53042; Mature: 53042

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKSGNDSLKESFKSIMAPKKLFCGFVAVLTLGAGLYTYSQTKEFNAGYVNTLYIQNEE
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCE
IAVIDREQRDKIEEILKEIKSEVEDEYDIDNLYIAEELEIEEEHRQTSPTDDMIEIKEKL
EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCCHHHHCCCCCHHHHHHHHHH
KENLTFHTRGYALYVDNEKIGVIREELSPDEIAEDVAQHFVDGDIEEVEIEEDIRVETKE
HHCCEEEECCEEEEECCCCEEEEHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEE
IYPGKLIDKDSAISIILNGTEYTETYEVQSGDSLWTIADETDKTVSQLREANPQLDEDEM
CCCCCEECCCCEEEEEECCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCHHHH
LRPGEEIELVKTESYVNVRTTKKRKVKESISYDTEYRTDSSLWWDESKVMEPGNVGKREV
CCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEE
EYRVHKKNGQEKEQEVLRKEILEEPENQVIVRGSAQRPRAEGDRFLFPINPSSGRFTSGY
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC
GPRGAGFHSGVDFAAPRGTPVRAAASGTVTFSGYKGGYGNLIVIEHSGGYETYYAHNSEN
CCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCH
HVQEGQQVNRGDVIGLVGSTGRSTGAHLHFEIHRHGSHTNPLNYFAPQ
HHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MEDKSGNDSLKESFKSIMAPKKLFCGFVAVLTLGAGLYTYSQTKEFNAGYVNTLYIQNEE
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCE
IAVIDREQRDKIEEILKEIKSEVEDEYDIDNLYIAEELEIEEEHRQTSPTDDMIEIKEKL
EEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHCCCCHHHHCCCCCHHHHHHHHHH
KENLTFHTRGYALYVDNEKIGVIREELSPDEIAEDVAQHFVDGDIEEVEIEEDIRVETKE
HHCCEEEECCEEEEECCCCEEEEHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEE
IYPGKLIDKDSAISIILNGTEYTETYEVQSGDSLWTIADETDKTVSQLREANPQLDEDEM
CCCCCEECCCCEEEEEECCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCHHHH
LRPGEEIELVKTESYVNVRTTKKRKVKESISYDTEYRTDSSLWWDESKVMEPGNVGKREV
CCCCCCEEEEEECCEEEEECCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCEEE
EYRVHKKNGQEKEQEVLRKEILEEPENQVIVRGSAQRPRAEGDRFLFPINPSSGRFTSGY
EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCC
GPRGAGFHSGVDFAAPRGTPVRAAASGTVTFSGYKGGYGNLIVIEHSGGYETYYAHNSEN
CCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEECCCCEEEEEEECCCH
HVQEGQQVNRGDVIGLVGSTGRSTGAHLHFEIHRHGSHTNPLNYFAPQ
HHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]