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The map label for this gene is vhcD [H]

Identifier: 188587259

GI number: 188587259

Start: 2865953

End: 2866387

Strand: Reverse

Name: vhcD [H]

Synonym: Nther_2661

Alternate gene names: 188587259

Gene position: 2866387-2865953 (Counterclockwise)

Preceding gene: 188587260

Following gene: 188587258

Centisome position: 90.55

GC content: 42.53

Gene sequence:

>435_bases
GTGACACAGCAAAATTTCGAGCCAAAAATTGTAGCTTTTTGTTGTAACTGGTGTAGTTATGCCGGAGCTGACCTGGCGGG
TACAGGAAGGCTCAAATATCCTGAAAACATCCGCATAATCCGCGTACCGTGCTCTAGTAGAGTGGAAGTTCCCCTGGTCA
TGCGTGCATTTCAAAACGGCGCTGATGGGGTGATGGTAGCAGGATGTCATCCGGGAGACTGTCATTACAATACGGGTAAC
TATCATACCCGAAGACGTATGATTTTAATGCAAAAAGTTCTAGACTTTATGGGAATCTCATCAGATAGATTGCTAGTTAA
ATGGATATCCGGTAACGAAGCAGCCAAATTTAAAGACACTGTCGAAAACTTTAATGAAAGACTTAAAAAACTTGGTGCTG
CGGACAAAGTGAGGGATATGAGATGCAAAAAATAA

Upstream 100 bases:

>100_bases
TTTGTCAAGGATGCGGTGCTTGTGCCGGGCTTTGCAGAAGTGGAGCTATGGATCTAGGTGGATTTACCAGCAAACAACTT
ATGGCGGAGGTGGATACCCT

Downstream 100 bases:

>100_bases
CAGCAGAATTGAGAAAAATAGCCAAAAATCTATTGAGTTCAGGCCAAGTAGATATGGTCTTAGGATATACTCAAGGGGAA
CTGCCATATCAAACAGTTCC

Product: F420-non-reducing hydrogenase subunit D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MTQQNFEPKIVAFCCNWCSYAGADLAGTGRLKYPENIRIIRVPCSSRVEVPLVMRAFQNGADGVMVAGCHPGDCHYNTGN
YHTRRRMILMQKVLDFMGISSDRLLVKWISGNEAAKFKDTVENFNERLKKLGAADKVRDMRCKK

Sequences:

>Translated_144_residues
MTQQNFEPKIVAFCCNWCSYAGADLAGTGRLKYPENIRIIRVPCSSRVEVPLVMRAFQNGADGVMVAGCHPGDCHYNTGN
YHTRRRMILMQKVLDFMGISSDRLLVKWISGNEAAKFKDTVENFNERLKKLGAADKVRDMRCKK
>Mature_143_residues
TQQNFEPKIVAFCCNWCSYAGADLAGTGRLKYPENIRIIRVPCSSRVEVPLVMRAFQNGADGVMVAGCHPGDCHYNTGNY
HTRRRMILMQKVLDFMGISSDRLLVKWISGNEAAKFKDTVENFNERLKKLGAADKVRDMRCKK

Specific function: Unknown

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mvhD/vhuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003813 [H]

Pfam domain/function: PF02662 FlpD [H]

EC number: NA

Molecular weight: Translated: 16321; Mature: 16190

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQQNFEPKIVAFCCNWCSYAGADLAGTGRLKYPENIRIIRVPCSSRVEVPLVMRAFQNG
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCC
ADGVMVAGCHPGDCHYNTGNYHTRRRMILMQKVLDFMGISSDRLLVKWISGNEAAKFKDT
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
VENFNERLKKLGAADKVRDMRCKK
HHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure 
TQQNFEPKIVAFCCNWCSYAGADLAGTGRLKYPENIRIIRVPCSSRVEVPLVMRAFQNG
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCC
ADGVMVAGCHPGDCHYNTGNYHTRRRMILMQKVLDFMGISSDRLLVKWISGNEAAKFKDT
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
VENFNERLKKLGAADKVRDMRCKK
HHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]