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The map label for this gene is yvrC [H]

Identifier: 188587216

GI number: 188587216

Start: 2811123

End: 2812265

Strand: Reverse

Name: yvrC [H]

Synonym: Nther_2617

Alternate gene names: 188587216

Gene position: 2812265-2811123 (Counterclockwise)

Preceding gene: 188587217

Following gene: 188587215

Centisome position: 88.84

GC content: 39.9

Gene sequence:

>1143_bases
TTGAAAAAAGAACTGTCTTACATAATTACTATTTTATTAATTTCTTTGATGATGGCCCTAGGCATTACAGGCTGCCAAGG
TCAACAAGAGGATCAAGTAAGCCAGGAAAAAGCGAGCGAAAATCAGGAGCAACAAGAAAAGGAGCAACAAGAAAAGGACC
AAAAAGAACAACAGGAACAAGAAAAACAACAAGAACAAATAACAATAGTGGATTCTGAAGGTAGATCTGTTGAAGTACCA
TCACCTCCAGAAAAAGTGGTAGTAGCTAATTCCAATATCAATGAATTACTCTACATTTTAGAATCAGAAGACAAAACCGT
CGGTGTGGCAGACTCTATAACATTTCCACCTGAAGCCCAAGAGTATCCCGAAGTCGGAAGCGTCTTTTCACCAAATGCGG
AAAAAATCCTTGAACTAGATCCTGACATAGTATTTGGCTTTGGCCAATACATGGATCAAGATATCAAAAAACAGATTGAA
CTTGCTGACATACCCGTAGTGTTTCTAGATGGATACAAAATTGAAACTTTGACACAAGATATTAGAACTATGGGTTTGAT
TATGGACCGAGAATCTCAAGCAGAAGAATATATAGACTTTATTGAAGGTCATATGCAACTGATTACAGATCGAATTGACG
AGATCGAAGATGAAGACAAGGTATCTGTTTATTCGGAAACCCAGGCAGAATACAGTGCTTATGCCAGTGGTTCCGGTGCT
CATCAGGCATTATTGAAAGCCGGAGGGGTAAATTTGGCAGGCAATGAACCTGGTTCATCTGTCACTATTAGCGATGAATG
GATTTTGGAGCAAGACCCTGATGTAATTGTCAAAAACTTATCAGATCGAAACGTAGCCATTGGATATGAAGAGGATAGCC
ATGATGAGATTACTGAAGAACTTGCCGCCATGGTGGACAGGCCCGGCTGGGATGAGCTGACTGCTGTAAATGAAGATAGG
GTAGTTGGTATTTCTACTGATTTGTACACATCCCCCCGAAGTGTAGTCGGTTTAAGTTATTTGGCCAAGTGGTTTTACCC
AGAACAATTTAACGATGTTGAACCAAAAGAGATTCATAGGGAATTACTAGAAGAATATTACGGTTTAGAATATCAAGGGG
TGTGGGTATATCCCCATGAGTAG

Upstream 100 bases:

>100_bases
TCACGCAAAGGAGGTTTTTTTATGTTTTACCTGACACAAATTTAACTTAAAGAATTCAAGTCCCAATTAAGAAAAAATAA
AATTTGAGGAGGCGTTGATT

Downstream 100 bases:

>100_bases
AAATATTCAGCAACAAGAGATCCAAAACCCTGAACAGGCCTACATATCTTCAACAAACAAAAAGATCTTGGTAATTTTGT
GTTTAATCACTGTTTTATTT

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MKKELSYIITILLISLMMALGITGCQGQQEDQVSQEKASENQEQQEKEQQEKDQKEQQEQEKQQEQITIVDSEGRSVEVP
SPPEKVVVANSNINELLYILESEDKTVGVADSITFPPEAQEYPEVGSVFSPNAEKILELDPDIVFGFGQYMDQDIKKQIE
LADIPVVFLDGYKIETLTQDIRTMGLIMDRESQAEEYIDFIEGHMQLITDRIDEIEDEDKVSVYSETQAEYSAYASGSGA
HQALLKAGGVNLAGNEPGSSVTISDEWILEQDPDVIVKNLSDRNVAIGYEEDSHDEITEELAAMVDRPGWDELTAVNEDR
VVGISTDLYTSPRSVVGLSYLAKWFYPEQFNDVEPKEIHRELLEEYYGLEYQGVWVYPHE

Sequences:

>Translated_380_residues
MKKELSYIITILLISLMMALGITGCQGQQEDQVSQEKASENQEQQEKEQQEKDQKEQQEQEKQQEQITIVDSEGRSVEVP
SPPEKVVVANSNINELLYILESEDKTVGVADSITFPPEAQEYPEVGSVFSPNAEKILELDPDIVFGFGQYMDQDIKKQIE
LADIPVVFLDGYKIETLTQDIRTMGLIMDRESQAEEYIDFIEGHMQLITDRIDEIEDEDKVSVYSETQAEYSAYASGSGA
HQALLKAGGVNLAGNEPGSSVTISDEWILEQDPDVIVKNLSDRNVAIGYEEDSHDEITEELAAMVDRPGWDELTAVNEDR
VVGISTDLYTSPRSVVGLSYLAKWFYPEQFNDVEPKEIHRELLEEYYGLEYQGVWVYPHE
>Mature_380_residues
MKKELSYIITILLISLMMALGITGCQGQQEDQVSQEKASENQEQQEKEQQEKDQKEQQEQEKQQEQITIVDSEGRSVEVP
SPPEKVVVANSNINELLYILESEDKTVGVADSITFPPEAQEYPEVGSVFSPNAEKILELDPDIVFGFGQYMDQDIKKQIE
LADIPVVFLDGYKIETLTQDIRTMGLIMDRESQAEEYIDFIEGHMQLITDRIDEIEDEDKVSVYSETQAEYSAYASGSGA
HQALLKAGGVNLAGNEPGSSVTISDEWILEQDPDVIVKNLSDRNVAIGYEEDSHDEITEELAAMVDRPGWDELTAVNEDR
VVGISTDLYTSPRSVVGLSYLAKWFYPEQFNDVEPKEIHRELLEEYYGLEYQGVWVYPHE

Specific function: Probably part of an ABC transporter complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 42981; Mature: 42981

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKELSYIITILLISLMMALGITGCQGQQEDQVSQEKASENQEQQEKEQQEKDQKEQQEQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EKQQEQITIVDSEGRSVEVPSPPEKVVVANSNINELLYILESEDKTVGVADSITFPPEAQ
HHHHHEEEEEECCCCEEECCCCCCEEEEECCCCCCEEEEEECCCCEEECCCCCCCCCCCC
EYPEVGSVFSPNAEKILELDPDIVFGFGQYMDQDIKKQIELADIPVVFLDGYKIETLTQD
CCCCCCCCCCCCHHHHEECCCCEEEHHHHHHHHHHHHHHHHHCCCEEEECCEEHHHHHHH
IRTMGLIMDRESQAEEYIDFIEGHMQLITDRIDEIEDEDKVSVYSETQAEYSAYASGSGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCHH
HQALLKAGGVNLAGNEPGSSVTISDEWILEQDPDVIVKNLSDRNVAIGYEEDSHDEITEE
HHHHHHHCCCCCCCCCCCCEEEECCCEEECCCCHHHHHCCCCCCEEEECCCCCHHHHHHH
LAAMVDRPGWDELTAVNEDRVVGISTDLYTSPRSVVGLSYLAKWFYPEQFNDVEPKEIHR
HHHHHCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ELLEEYYGLEYQGVWVYPHE
HHHHHHHCCEEEEEEEECCC
>Mature Secondary Structure
MKKELSYIITILLISLMMALGITGCQGQQEDQVSQEKASENQEQQEKEQQEKDQKEQQEQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EKQQEQITIVDSEGRSVEVPSPPEKVVVANSNINELLYILESEDKTVGVADSITFPPEAQ
HHHHHEEEEEECCCCEEECCCCCCEEEEECCCCCCEEEEEECCCCEEECCCCCCCCCCCC
EYPEVGSVFSPNAEKILELDPDIVFGFGQYMDQDIKKQIELADIPVVFLDGYKIETLTQD
CCCCCCCCCCCCHHHHEECCCCEEEHHHHHHHHHHHHHHHHHCCCEEEECCEEHHHHHHH
IRTMGLIMDRESQAEEYIDFIEGHMQLITDRIDEIEDEDKVSVYSETQAEYSAYASGSGA
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCHH
HQALLKAGGVNLAGNEPGSSVTISDEWILEQDPDVIVKNLSDRNVAIGYEEDSHDEITEE
HHHHHHHCCCCCCCCCCCCEEEECCCEEECCCCHHHHHCCCCCCEEEECCCCCHHHHHHH
LAAMVDRPGWDELTAVNEDRVVGISTDLYTSPRSVVGLSYLAKWFYPEQFNDVEPKEIHR
HHHHHCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ELLEEYYGLEYQGVWVYPHE
HHHHHHHCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]