Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 188587172

GI number: 188587172

Start: 2759928

End: 2760506

Strand: Reverse

Name: ydcN [H]

Synonym: Nther_2571

Alternate gene names: 188587172

Gene position: 2760506-2759928 (Counterclockwise)

Preceding gene: 188587174

Following gene: 188587171

Centisome position: 87.2

GC content: 39.21

Gene sequence:

>579_bases
ATGTCAAAAAATTATAGTGACACTGAAATTAATTTAAGTGAAATTGGTGAGACAATAAAAAAATTAAGACAAACTAAAGA
CCTAAAACTAAAAGATGTATCGGAAGAGACAGGGATTAGTACAGGTCTATTAAGCCAGATTGAAAGAGGGCAGGTTCAGG
CATCTCTGGGTAGTCTGTGGAAAATCTCCAAAGCTTTGGAAGTGCCCTTGGGCAGTTTTTTTGAAGAGTTGAACCGCGAG
AAAGTTAGTGTGGTTAGAAAAGAAGACAGAAAACAGCTAGACATTCCCAGATCAAATGTAATTTATCAGTTATTATCACC
GGATATGAATCGCAAAATTGAGATGTTGCTAGTCACTTTAAAAAGTGGAGAAGTGGAAGAACACGAAAAAGTTACCCATG
AAGGTGAAGAATGTGGCTTAGTGATTAAAGGAAAGCTTGGTATCACCGTCGGTGATGAAACTATTACCCTGGAAGAGGGA
GATAGTGCTTATTTTGATTCCACTATTCCCCACAGGTTTTTTAACCCTGGAGATGAAGAGTCCATCAGCGTATGGGCCAT
GACCCCGCCTTCTTTCTGA

Upstream 100 bases:

>100_bases
CTCAGAACATGTCAAAATATAGAAAAGAAAAGTTTAGCCATATTAAAAAAATTAATTTTTATCAAAAAATTTTGTTAAGA
AGGGAGGATTTTGTTTAGCT

Downstream 100 bases:

>100_bases
TAAATTAACCAAATTTTACATAGGGGGTAAAAATTGATGTATGGTGCAATACTGGCCGTTTATGTTTTGATAATCTTGGG
AATTGGGTTTTACACATCGC

Product: transcriptional regulator, XRE family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSKNYSDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPLGSFFEELNRE
KVSVVRKEDRKQLDIPRSNVIYQLLSPDMNRKIEMLLVTLKSGEVEEHEKVTHEGEECGLVIKGKLGITVGDETITLEEG
DSAYFDSTIPHRFFNPGDEESISVWAMTPPSF

Sequences:

>Translated_192_residues
MSKNYSDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPLGSFFEELNRE
KVSVVRKEDRKQLDIPRSNVIYQLLSPDMNRKIEMLLVTLKSGEVEEHEKVTHEGEECGLVIKGKLGITVGDETITLEEG
DSAYFDSTIPHRFFNPGDEESISVWAMTPPSF
>Mature_191_residues
SKNYSDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLWKISKALEVPLGSFFEELNREK
VSVVRKEDRKQLDIPRSNVIYQLLSPDMNRKIEMLLVTLKSGEVEEHEKVTHEGEECGLVIKGKLGITVGDETITLEEGD
SAYFDSTIPHRFFNPGDEESISVWAMTPPSF

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=168, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787557, Length=180, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21573; Mature: 21442

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNYSDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLW
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHHHHH
KISKALEVPLGSFFEELNREKVSVVRKEDRKQLDIPRSNVIYQLLSPDMNRKIEMLLVTL
HHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEE
KSGEVEEHEKVTHEGEECGLVIKGKLGITVGDETITLEEGDSAYFDSTIPHRFFNPGDEE
CCCCCHHHHHHHCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCCCCCCHHHCCCCCCC
SISVWAMTPPSF
CEEEEEECCCCC
>Mature Secondary Structure 
SKNYSDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLW
CCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCHHHCCCHHHHHHHHHHHHHHHHHHHH
KISKALEVPLGSFFEELNREKVSVVRKEDRKQLDIPRSNVIYQLLSPDMNRKIEMLLVTL
HHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEE
KSGEVEEHEKVTHEGEECGLVIKGKLGITVGDETITLEEGDSAYFDSTIPHRFFNPGDEE
CCCCCHHHHHHHCCCCCCCEEEECCEEEEECCCEEEEECCCCCCCCCCCCHHHCCCCCCC
SISVWAMTPPSF
CEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]