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The map label for this gene is ydcM [C]

Identifier: 188587092

GI number: 188587092

Start: 2673546

End: 2674688

Strand: Reverse

Name: ydcM [C]

Synonym: Nther_2486

Alternate gene names: 188587092

Gene position: 2674688-2673546 (Counterclockwise)

Preceding gene: 188587093

Following gene: 188587091

Centisome position: 84.49

GC content: 33.16

Gene sequence:

>1143_bases
GTGATTATAACTAAAACCTATAAGTATAAGTTATACGAGTCAAAAAAGAATAAAAATATTCATCAGAAAATAGATATAGC
TGGTCTTATCTATAATCATTGCATTGCCCTCCACAAAAGGTATTATAAACTAACAGGTAAACACTTAAATAAGTTTCAGT
TAATGAAGCACATAACCAAATTAAAGAAAAAAGACAAATATCAACATTGGAACCTAGTAGGCTCACAAGCAATTCAAGAT
ATAGTAGATAGAATAGATAGAGCATACCAGTTATTCTTTAGGAATTTGAAACATGGTATTAAAACTTCACCGCCTAAATT
CAAAAAAATTAAAAAATACAAAAGCTTCACTTTAAAACAAGCAGGTTGGAAATATGTTGACGATAACTTAATCAAAATCG
GAAAGAAGGTCTATAAATTCAGTAAAAGCAGAGAGCTTCCAGAAAATATTAAAACTGTAACTATAAAACGAGATCCTTTA
GGCGACCTGTATATTTGTTTTGTAGTTAAAGAAAAAATCGAAGTCCCCGATAGGCAGGGTAAAAGCTCCATCGGCTTGGA
CTTTGGCTTGAAGACATTTCTTGTAGCATCAGACGGTACGAAATATGAAGCACCATTCTATTATCACCACAAATTGAAGG
AATTAAAGAAAGCACAGAAAGAATTAAGTTCAAAAGAAAAAGGCTCTAATAACCGAAACAAAGCTAGGAAAAAAGTTTTT
AGACTTCATAAGAAAGTGGTCAATCAGCGTAGAGCCTACTTCTTTAAACTGGCACATGAGCTAACAGATAAGTATGAATA
CATTTTTATTGAAGACCTCAACATGAAAGCTATGCAAAAGATGTGGGGTAAAAAGATTCAAGACTTAGGATATTCTACTT
TTGTTGAAATTCTCGAATATGTTGCCAAGAAAAAAGGTTCTAGAGTAGTTAAGGTAGATCGCTTTTATCCAAGTTCAAAA
ATTTGTAGTAAGTGCGGTGAAATAAATCAAAACCTTAAACTATCAGACAGAATTTTCGAATGTGATTGCGGTTTAAAAAT
TGACAGAGATCTGAACGCTGCAATTAATATACACATGGGCGGGGCATCGTCCATTGGGTTAGGAAACGTAAGACCTGCTA
TCATAGAGGCTGTTTCTGCTTGA

Upstream 100 bases:

>100_bases
GGCTGCCTTCACTCTGGACTCGTAGTTATTATGTTGAGTCGGTCGGTCATATATCAGAAGATACTATTCGTAAATATATC
GAAGACCAGGAGGGTAAATA

Downstream 100 bases:

>100_bases
CCCCAGAATCCCACTGCTTTAGCTGTGGGAGTATGTCAAGAAGGCGGTTCGCCCGAACCAAATAGCCAAAAAGATGTTGG
AAGATGGAGAAAAAATAGAT

Product: putative transposase IS891/IS1136/IS1341 family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MIITKTYKYKLYESKKNKNIHQKIDIAGLIYNHCIALHKRYYKLTGKHLNKFQLMKHITKLKKKDKYQHWNLVGSQAIQD
IVDRIDRAYQLFFRNLKHGIKTSPPKFKKIKKYKSFTLKQAGWKYVDDNLIKIGKKVYKFSKSRELPENIKTVTIKRDPL
GDLYICFVVKEKIEVPDRQGKSSIGLDFGLKTFLVASDGTKYEAPFYYHHKLKELKKAQKELSSKEKGSNNRNKARKKVF
RLHKKVVNQRRAYFFKLAHELTDKYEYIFIEDLNMKAMQKMWGKKIQDLGYSTFVEILEYVAKKKGSRVVKVDRFYPSSK
ICSKCGEINQNLKLSDRIFECDCGLKIDRDLNAAINIHMGGASSIGLGNVRPAIIEAVSA

Sequences:

>Translated_380_residues
MIITKTYKYKLYESKKNKNIHQKIDIAGLIYNHCIALHKRYYKLTGKHLNKFQLMKHITKLKKKDKYQHWNLVGSQAIQD
IVDRIDRAYQLFFRNLKHGIKTSPPKFKKIKKYKSFTLKQAGWKYVDDNLIKIGKKVYKFSKSRELPENIKTVTIKRDPL
GDLYICFVVKEKIEVPDRQGKSSIGLDFGLKTFLVASDGTKYEAPFYYHHKLKELKKAQKELSSKEKGSNNRNKARKKVF
RLHKKVVNQRRAYFFKLAHELTDKYEYIFIEDLNMKAMQKMWGKKIQDLGYSTFVEILEYVAKKKGSRVVKVDRFYPSSK
ICSKCGEINQNLKLSDRIFECDCGLKIDRDLNAAINIHMGGASSIGLGNVRPAIIEAVSA
>Mature_380_residues
MIITKTYKYKLYESKKNKNIHQKIDIAGLIYNHCIALHKRYYKLTGKHLNKFQLMKHITKLKKKDKYQHWNLVGSQAIQD
IVDRIDRAYQLFFRNLKHGIKTSPPKFKKIKKYKSFTLKQAGWKYVDDNLIKIGKKVYKFSKSRELPENIKTVTIKRDPL
GDLYICFVVKEKIEVPDRQGKSSIGLDFGLKTFLVASDGTKYEAPFYYHHKLKELKKAQKELSSKEKGSNNRNKARKKVF
RLHKKVVNQRRAYFFKLAHELTDKYEYIFIEDLNMKAMQKMWGKKIQDLGYSTFVEILEYVAKKKGSRVVKVDRFYPSSK
ICSKCGEINQNLKLSDRIFECDCGLKIDRDLNAAINIHMGGASSIGLGNVRPAIIEAVSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=364, Percent_Identity=27.1978021978022, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44367; Mature: 44367

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure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CCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]