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The map label for this gene is yedQ [C]

Identifier: 188587016

GI number: 188587016

Start: 2576468

End: 2578339

Strand: Reverse

Name: yedQ [C]

Synonym: Nther_2408

Alternate gene names: 188587016

Gene position: 2578339-2576468 (Counterclockwise)

Preceding gene: 188587018

Following gene: 188587014

Centisome position: 81.45

GC content: 38.09

Gene sequence:

>1872_bases
ATGGCCAAAGGAAGCAAACAATATCAAGTTATGAGTCAATATCTTAAAATTTCTGAAAAGGTGTTAATTGTACTTGATTT
AAATGGAATCATTGAATTTGTAAACGATAAAGGTTGCCAACTACTAGAGCTAAAGGAAGAACAGCTTTTGGGGAAATCTT
TTTTTAAAGAATTTCTTTCTTTGGAAGAAAACCTTCGTTTTCTTCAGGTTTTTAATGAAGTGTTAGCCCAAGAAAATAAT
GAGTTTTACAAGGATATCGATCTATATGTCATGCCAGCCATAGGAACCCCCAGGTTATTTTCAACTAGGCTAGGTCTTTA
CAGGGATGACAGCGGAGAAATAACAGGGGTCATAATTGCCGGGGAATCAATCAGTGAATGTGAAAGTAATAGTAAAGTAC
TTAACAAAAAAGAAAAAATTGAACAGGTCCTTGGAAGCAGTGAAGAAAAATTTCGTAAATTGGCTAACAATATTCCGGGA
ATCATTTATCTTTGCCAAAATGAAGATGATTATCCCATGATATACTTAAATGATAATATTGAAGAAATTACAGGTTTTTC
AAAACAGGAATTCTTAGAAGGTAACAGAAACTTTAGAAGTATTATACATAAAGAAGACCTGCCCCAGGTAAAAAATAAAA
TTAATAGTGCTCTCCTTGATAATAAACCCTTTCATTTAATTTATCGAATATTTGATGCCCGAGGTGAAATGCGTTGGTTT
GAAGAACGAGGTGTAGCGATCAATGGAGGGGGGCGGAATCATTATCTGGAAGGGTTTATCCACGATATTACAGCCCGCAA
AGAAGCTGAAGAACAGATTAGATATTTAAGTTTCTATGATGAACTCACTGGCCTGTATAATCGAAGATTCTTTAAAGAAG
AATTGTATCGTTTGAACACTAACAGGCAGCTCCCTATGAGCCTAATACTGGGGGATGTGAATGGGCTCAAACTAGTTAAT
GATGCCTTTGGCCACCTGGAAGGAGACAGGCTGTTAATCAAAGCTGCAGAAACGATAAAAAAATCCTGTCGAAGCGAAGA
TATTATTGCTCGCTTTGGTGGAGATGAATTTATTGTCTTGCTTCCTCAGACGAAAGCTAAAGAAGCCGAGTTGGTCTCAC
AAAGAATAGTTGACAATATGCGTGAACAGGAATTTAAAAAATTTAATTTGAGTATTTCGCTGGGATTAGCCACTAAGGAA
ATTGAAGAAGAGGATAAAAATACTGAAACTTTAATCAGGGAAGCCGAGGAGAGGATGTATCAAAAAAAGATCGCAGATAG
CAAAAAAGTTCGCAGTGAAATAATTGAATCATTACTGAAGATATTACGAGAAAAAAGTTTCGAAACGGAAATGCACGGCA
AAAGACTGAGATTATTATCTCGAAAAATGGGAAAGGCCTTAAAACTTCCTGACAGTGAGTTGCAGAAATTATCCCATCTA
TCTGTACTTCATGATGTGGGCAAAGTGACTATCGGAGAAAAAATATTAAAAAAGAAGGAACCCTTAACTGATAAAGAATG
GGAGATCATTAAAAGACATCCCGAAGATGGGTTTAAAATCGCCCTGGCAGCTCCTGAACTTGCCCCTATCGCAGAAGCCA
TTTTACATCACCATGAGCGCTGGGACGGTAATGGCTATCCTCAAGGGCTTTCAGGGGATAATATCCCCTTGCTTTCCAGA
ATTATTTCCATAGTGGACGCTTACGATGTAATGATTCGCGGCAGGAGTTATAAAGAACCCATGGGCAAGGAGAAAGCCCT
ATGGGAAATCTTGCGCTGCGGAGGAAGGCAATTTGATCCCCAACTGGCGAAGCTATTTGTGGAAATCATTCAGGATCAGT
CCCAGGGTGTGCATACTCCTTCTATCCATTAA

Upstream 100 bases:

>100_bases
GTTTTGATTTCTGTCTAAAACTATCTTAACTCCGGGACGGAGACTGATTCAAATATCATATAACTTAACAGAACTAAATT
ATCTACTAGGAGGCATTAAC

Downstream 100 bases:

>100_bases
CATTCCTCAACCAAGTTAGTGAAAATTTCAACCAGCTCAGGATCAAACTGTGTTCCGGCACACCTTTTAATTTCAGCTAT
GGCTTGTTGCTTGGAAACTG

Product: diguanylate cyclase and metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 622

Protein sequence:

>623_residues
MAKGSKQYQVMSQYLKISEKVLIVLDLNGIIEFVNDKGCQLLELKEEQLLGKSFFKEFLSLEENLRFLQVFNEVLAQENN
EFYKDIDLYVMPAIGTPRLFSTRLGLYRDDSGEITGVIIAGESISECESNSKVLNKKEKIEQVLGSSEEKFRKLANNIPG
IIYLCQNEDDYPMIYLNDNIEEITGFSKQEFLEGNRNFRSIIHKEDLPQVKNKINSALLDNKPFHLIYRIFDARGEMRWF
EERGVAINGGGRNHYLEGFIHDITARKEAEEQIRYLSFYDELTGLYNRRFFKEELYRLNTNRQLPMSLILGDVNGLKLVN
DAFGHLEGDRLLIKAAETIKKSCRSEDIIARFGGDEFIVLLPQTKAKEAELVSQRIVDNMREQEFKKFNLSISLGLATKE
IEEEDKNTETLIREAEERMYQKKIADSKKVRSEIIESLLKILREKSFETEMHGKRLRLLSRKMGKALKLPDSELQKLSHL
SVLHDVGKVTIGEKILKKKEPLTDKEWEIIKRHPEDGFKIALAAPELAPIAEAILHHHERWDGNGYPQGLSGDNIPLLSR
IISIVDAYDVMIRGRSYKEPMGKEKALWEILRCGGRQFDPQLAKLFVEIIQDQSQGVHTPSIH

Sequences:

>Translated_623_residues
MAKGSKQYQVMSQYLKISEKVLIVLDLNGIIEFVNDKGCQLLELKEEQLLGKSFFKEFLSLEENLRFLQVFNEVLAQENN
EFYKDIDLYVMPAIGTPRLFSTRLGLYRDDSGEITGVIIAGESISECESNSKVLNKKEKIEQVLGSSEEKFRKLANNIPG
IIYLCQNEDDYPMIYLNDNIEEITGFSKQEFLEGNRNFRSIIHKEDLPQVKNKINSALLDNKPFHLIYRIFDARGEMRWF
EERGVAINGGGRNHYLEGFIHDITARKEAEEQIRYLSFYDELTGLYNRRFFKEELYRLNTNRQLPMSLILGDVNGLKLVN
DAFGHLEGDRLLIKAAETIKKSCRSEDIIARFGGDEFIVLLPQTKAKEAELVSQRIVDNMREQEFKKFNLSISLGLATKE
IEEEDKNTETLIREAEERMYQKKIADSKKVRSEIIESLLKILREKSFETEMHGKRLRLLSRKMGKALKLPDSELQKLSHL
SVLHDVGKVTIGEKILKKKEPLTDKEWEIIKRHPEDGFKIALAAPELAPIAEAILHHHERWDGNGYPQGLSGDNIPLLSR
IISIVDAYDVMIRGRSYKEPMGKEKALWEILRCGGRQFDPQLAKLFVEIIQDQSQGVHTPSIH
>Mature_622_residues
AKGSKQYQVMSQYLKISEKVLIVLDLNGIIEFVNDKGCQLLELKEEQLLGKSFFKEFLSLEENLRFLQVFNEVLAQENNE
FYKDIDLYVMPAIGTPRLFSTRLGLYRDDSGEITGVIIAGESISECESNSKVLNKKEKIEQVLGSSEEKFRKLANNIPGI
IYLCQNEDDYPMIYLNDNIEEITGFSKQEFLEGNRNFRSIIHKEDLPQVKNKINSALLDNKPFHLIYRIFDARGEMRWFE
ERGVAINGGGRNHYLEGFIHDITARKEAEEQIRYLSFYDELTGLYNRRFFKEELYRLNTNRQLPMSLILGDVNGLKLVND
AFGHLEGDRLLIKAAETIKKSCRSEDIIARFGGDEFIVLLPQTKAKEAELVSQRIVDNMREQEFKKFNLSISLGLATKEI
EEEDKNTETLIREAEERMYQKKIADSKKVRSEIIESLLKILREKSFETEMHGKRLRLLSRKMGKALKLPDSELQKLSHLS
VLHDVGKVTIGEKILKKKEPLTDKEWEIIKRHPEDGFKIALAAPELAPIAEAILHHHERWDGNGYPQGLSGDNIPLLSRI
ISIVDAYDVMIRGRSYKEPMGKEKALWEILRCGGRQFDPQLAKLFVEIIQDQSQGVHTPSIH

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=36.094674556213, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081881, Length=211, Percent_Identity=28.436018957346, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=31.8681318681319, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=32.3529411764706, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=34.3558282208589, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=28.2608695652174, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=30.8176100628931, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=31.7073170731707, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1788085, Length=201, Percent_Identity=24.3781094527363, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787816, Length=149, Percent_Identity=32.2147651006711, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=104, Percent_Identity=40.3846153846154, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=35.0993377483444, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 71815; Mature: 71683

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGSKQYQVMSQYLKISEKVLIVLDLNGIIEFVNDKGCQLLELKEEQLLGKSFFKEFLS
CCCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
LEENLRFLQVFNEVLAQENNEFYKDIDLYVMPAIGTPRLFSTRLGLYRDDSGEITGVIIA
HHHHHHHHHHHHHHHHCCCCCHHHCCCEEEECCCCCCHHHHHHCCCEECCCCCEEEEEEE
GESISECESNSKVLNKKEKIEQVLGSSEEKFRKLANNIPGIIYLCQNEDDYPMIYLNDNI
CCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCH
EEITGFSKQEFLEGNRNFRSIIHKEDLPQVKNKINSALLDNKPFHLIYRIFDARGEMRWF
HHHHCCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH
EERGVAINGGGRNHYLEGFIHDITARKEAEEQIRYLSFYDELTGLYNRRFFKEELYRLNT
HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NRQLPMSLILGDVNGLKLVNDAFGHLEGDRLLIKAAETIKKSCRSEDIIARFGGDEFIVL
CCCCCHHHEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHEEECCCEEEEE
LPQTKAKEAELVSQRIVDNMREQEFKKFNLSISLGLATKEIEEEDKNTETLIREAEERMY
ECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCCHHHHHHHHHHHHHH
QKKIADSKKVRSEIIESLLKILREKSFETEMHGKRLRLLSRKMGKALKLPDSELQKLSHL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SVLHDVGKVTIGEKILKKKEPLTDKEWEIIKRHPEDGFKIALAAPELAPIAEAILHHHER
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC
WDGNGYPQGLSGDNIPLLSRIISIVDAYDVMIRGRSYKEPMGKEKALWEILRCGGRQFDP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCH
QLAKLFVEIIQDQSQGVHTPSIH
HHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AKGSKQYQVMSQYLKISEKVLIVLDLNGIIEFVNDKGCQLLELKEEQLLGKSFFKEFLS
CCCCHHHHHHHHHHHCCCCEEEEEECHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHH
LEENLRFLQVFNEVLAQENNEFYKDIDLYVMPAIGTPRLFSTRLGLYRDDSGEITGVIIA
HHHHHHHHHHHHHHHHCCCCCHHHCCCEEEECCCCCCHHHHHHCCCEECCCCCEEEEEEE
GESISECESNSKVLNKKEKIEQVLGSSEEKFRKLANNIPGIIYLCQNEDDYPMIYLNDNI
CCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCH
EEITGFSKQEFLEGNRNFRSIIHKEDLPQVKNKINSALLDNKPFHLIYRIFDARGEMRWF
HHHHCCCHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHH
EERGVAINGGGRNHYLEGFIHDITARKEAEEQIRYLSFYDELTGLYNRRFFKEELYRLNT
HHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NRQLPMSLILGDVNGLKLVNDAFGHLEGDRLLIKAAETIKKSCRSEDIIARFGGDEFIVL
CCCCCHHHEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHEEECCCEEEEE
LPQTKAKEAELVSQRIVDNMREQEFKKFNLSISLGLATKEIEEEDKNTETLIREAEERMY
ECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHCCHHHHHHHHHHHHHH
QKKIADSKKVRSEIIESLLKILREKSFETEMHGKRLRLLSRKMGKALKLPDSELQKLSHL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
SVLHDVGKVTIGEKILKKKEPLTDKEWEIIKRHPEDGFKIALAAPELAPIAEAILHHHER
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC
WDGNGYPQGLSGDNIPLLSRIISIVDAYDVMIRGRSYKEPMGKEKALWEILRCGGRQFDP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCH
QLAKLFVEIIQDQSQGVHTPSIH
HHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]