Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 188587011

GI number: 188587011

Start: 2567960

End: 2568874

Strand: Reverse

Name: dppC [H]

Synonym: Nther_2403

Alternate gene names: 188587011

Gene position: 2568874-2567960 (Counterclockwise)

Preceding gene: 188587012

Following gene: 188587010

Centisome position: 81.15

GC content: 45.36

Gene sequence:

>915_bases
ATGGCAGAATCAGAAACCCAAAAAAATACCTCTGTCACGGAAAGTACAGATCAACAGAAAACTGAACAGGTTGGTCGTAG
TCAATGGGCTGAGGCCTGGCGACGCCTGAAGAGGAATAAATCGGCCATGGTAGGATTGTTTCTCGTGGCCCTACTCTTTG
TAACGGCTATTTTTGCCGATGTAATTGCTCCTTATGATTACGCTGAACAAAATTACGATGCAGTGAGGGAATCGCCTTCT
TCTGAATTTCTACTAGGTACTGACCACTTGGGTAGATGTATCTTGAGTAGAATTATTCACGGTACTCGCCTGTCTATTCA
GGTTGGTTTCATAGCTATAGCTATTTCTCTAGTATCGGGAAGTCTTTTAGGTGCTATAGCGGGTTATTTTGGCCATTTGG
TGGACAATGTTGTCATGAGAGTTGTGGATATAATTTTATCTATTCCACCTATTTTGTTGGCCATTGCCATTGTTAGTGCC
ATTGGCCCCTCGCTGACTAATTTATTTATTGCAGTAGGAATAGGGTTTATACCCCAATTTGCCCGGATCGTCCGGGGTTC
TGTACTAACCTTGAAAGAGGAAGAATTCGTAGAAGCTGCCCAGGCCCTGGGAGCTAAAAATAGCAGGATAATAGTTAAGC
ATATCATCCCCAATGCTCTAGCTCCTATCATTGTACAGGCTACCCTGGGTGTAGCTATGGCTATATTATCAGCTGCAGGA
CTGTCCTTCATCGGTCTGGGTGCACAGCCGCCGGCTCCTGAATGGGGAGCAATGCTTTCCGATGGTATGAGATTTATCAG
GGATTCCTGGTGGATTTCTACATTCCCGGGACTAGCCATTGCCCTAACTATACTGGGGCTAAACCTATTTGGAGACGGCT
TGAGAGATGCCTTGGACCCAAGGTTGAAGGACTAA

Upstream 100 bases:

>100_bases
TTCTATGCTTTCTTAGACCCACGTATCAAGGCCCAGTATCAGTAAGAGAAGCAGTTTGACAAGGTCTCTTAACTTTTGTT
TTTAAGGAGGTAGATGAGGC

Downstream 100 bases:

>100_bases
TTTGCTAAATTGGTATTGATATTAAGACAGTGAGATCTCTTAATAAACCGAAAAATTTACGTGAAATAGAACCAGCGCGA
TTAGATTCGCATAGGAGGGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAESETQKNTSVTESTDQQKTEQVGRSQWAEAWRRLKRNKSAMVGLFLVALLFVTAIFADVIAPYDYAEQNYDAVRESPS
SEFLLGTDHLGRCILSRIIHGTRLSIQVGFIAIAISLVSGSLLGAIAGYFGHLVDNVVMRVVDIILSIPPILLAIAIVSA
IGPSLTNLFIAVGIGFIPQFARIVRGSVLTLKEEEFVEAAQALGAKNSRIIVKHIIPNALAPIIVQATLGVAMAILSAAG
LSFIGLGAQPPAPEWGAMLSDGMRFIRDSWWISTFPGLAIALTILGLNLFGDGLRDALDPRLKD

Sequences:

>Translated_304_residues
MAESETQKNTSVTESTDQQKTEQVGRSQWAEAWRRLKRNKSAMVGLFLVALLFVTAIFADVIAPYDYAEQNYDAVRESPS
SEFLLGTDHLGRCILSRIIHGTRLSIQVGFIAIAISLVSGSLLGAIAGYFGHLVDNVVMRVVDIILSIPPILLAIAIVSA
IGPSLTNLFIAVGIGFIPQFARIVRGSVLTLKEEEFVEAAQALGAKNSRIIVKHIIPNALAPIIVQATLGVAMAILSAAG
LSFIGLGAQPPAPEWGAMLSDGMRFIRDSWWISTFPGLAIALTILGLNLFGDGLRDALDPRLKD
>Mature_303_residues
AESETQKNTSVTESTDQQKTEQVGRSQWAEAWRRLKRNKSAMVGLFLVALLFVTAIFADVIAPYDYAEQNYDAVRESPSS
EFLLGTDHLGRCILSRIIHGTRLSIQVGFIAIAISLVSGSLLGAIAGYFGHLVDNVVMRVVDIILSIPPILLAIAIVSAI
GPSLTNLFIAVGIGFIPQFARIVRGSVLTLKEEEFVEAAQALGAKNSRIIVKHIIPNALAPIIVQATLGVAMAILSAAGL
SFIGLGAQPPAPEWGAMLSDGMRFIRDSWWISTFPGLAIALTILGLNLFGDGLRDALDPRLKD

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=298, Percent_Identity=44.9664429530201, Blast_Score=258, Evalue=4e-70,
Organism=Escherichia coli, GI1789964, Length=279, Percent_Identity=51.2544802867383, Blast_Score=239, Evalue=1e-64,
Organism=Escherichia coli, GI1787760, Length=290, Percent_Identity=40.3448275862069, Blast_Score=226, Evalue=1e-60,
Organism=Escherichia coli, GI1787498, Length=298, Percent_Identity=38.5906040268456, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1787549, Length=288, Percent_Identity=37.1527777777778, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789889, Length=239, Percent_Identity=37.2384937238494, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1788505, Length=224, Percent_Identity=32.5892857142857, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32677; Mature: 32545

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESETQKNTSVTESTDQQKTEQVGRSQWAEAWRRLKRNKSAMVGLFLVALLFVTAIFAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VIAPYDYAEQNYDAVRESPSSEFLLGTDHLGRCILSRIIHGTRLSIQVGFIAIAISLVSG
HHCCCHHHHCCHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SLLGAIAGYFGHLVDNVVMRVVDIILSIPPILLAIAIVSAIGPSLTNLFIAVGIGFIPQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
ARIVRGSVLTLKEEEFVEAAQALGAKNSRIIVKHIIPNALAPIIVQATLGVAMAILSAAG
HHHHCCCHHEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSFIGLGAQPPAPEWGAMLSDGMRFIRDSWWISTFPGLAIALTILGLNLFGDGLRDALDP
HHHEECCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RLKD
CCCC
>Mature Secondary Structure 
AESETQKNTSVTESTDQQKTEQVGRSQWAEAWRRLKRNKSAMVGLFLVALLFVTAIFAD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VIAPYDYAEQNYDAVRESPSSEFLLGTDHLGRCILSRIIHGTRLSIQVGFIAIAISLVSG
HHCCCHHHHCCHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SLLGAIAGYFGHLVDNVVMRVVDIILSIPPILLAIAIVSAIGPSLTNLFIAVGIGFIPQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
ARIVRGSVLTLKEEEFVEAAQALGAKNSRIIVKHIIPNALAPIIVQATLGVAMAILSAAG
HHHHCCCHHEECHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LSFIGLGAQPPAPEWGAMLSDGMRFIRDSWWISTFPGLAIALTILGLNLFGDGLRDALDP
HHHEECCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RLKD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]