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The map label for this gene is spoVB [H]

Identifier: 188586936

GI number: 188586936

Start: 2473528

End: 2475132

Strand: Reverse

Name: spoVB [H]

Synonym: Nther_2328

Alternate gene names: 188586936

Gene position: 2475132-2473528 (Counterclockwise)

Preceding gene: 188586937

Following gene: 188586934

Centisome position: 78.19

GC content: 42.49

Gene sequence:

>1605_bases
ATGGCTGAAAGGCTGGCCAAGGGTGCCGCCATATTAATGGCAGCCGGGGTGGTCAGCAAGCTTCTAGGAGCTTTTTACAG
GATACCCCTTTCTCGGATTATAGAAGCTGAGGGCATGGGCCTTTACGAAATGGCCTATCCCATTTACAGCCTACTTCTAA
TAATGGCTGTTTCAGGTGTTCCTATTGCCGTTAGCAAGCTAGTTTCCGAACAAATCGCCCAAGGTAAAGAAAAAGAAAGA
CTGAGAGTTTTTGCGGTCTCATTAGTTTTTTTATTCATCACTGGTTCTTTCTTTTCCGGTCTTATGTATTTTTTGGCCGA
ACCCATTAGTTATGGATTTCTCGGAGATTATCGAGTAATTTATTCTCTCAGGGCTATTTCTCCGGCCATCTTGATTGTGT
CATTAATGGCAGCTTTTCGCGGCTATTTTCAAGGTCTTAGAATAATGAGTGCCACAGCTATTTCCCAGGTTACGGAGCAA
TTTGTCAGGGTAATAACAATGCTAGCTCTGGCTTATGTTTTGGTTGAAAGAGGAATCGCTTATGGAGCAGCAGGAGCTAC
CTTTGGTGCTGTTACCGGTGGGTTGTCAGGTCTAATAATAATGTTATTATTAATACCCCTGTACGGTGTTGGTCCGGGAT
TGTTGAACTTTTTTAAGGCTATCCTGTCAACTCTTAATTTGGTCCGTTCAGTTCCCTTAGTTATTCGGCTGCTATCCATA
GCCATCCCCGTTTCTTTAGGAGCCCTGGTTATGCCTGTCATGCAGACATTAGATGCCATGATAATTCCACAAAGGTTGCA
GGTAGCGGGTTTTAGTCCATCAGAAGCCACCCATTTATACGGTTACTTATCAGGAATGGCCCTTAGGCTGGTGAGCTTGC
CTACGACTTTATCCCTGGCTCTTGGATATAGTCTTGTCCCAGCATTAGCCGAGAGTACTGCCCTGAAAAAGTTTGATTTG
GTTAGAAGTCAACTGGGAAAAGCTATCAGACTGACCTTTATTTTCTCGATTCCTTCATCAGTGGGTCTATTTGTTATGGC
CGAGCGCTTAACTTTATTATTGTTTGGCTATGAAGGAGCAGGGGATCCCCTGAGATTTTTGGCAGCGGGAACAATTTTTC
TATCTTTTCAGCAGGTAAGTGCTTCAGCTCTGCAGGGTACCGGTTATCCGGTACTTCCGGTAAAAAACCTGTGTTACGGA
GCCTTGGTTAATTTAGTCATAAATTATTATTTAACGGCTATTCCCCAAATTGGAATAATTGGTGGGGCTATCGGTACTTG
TACCGGGTTTTTGGTGGCTTCTATATTTAATTTTAAAGACATTAAAGGTAAAATAGGCTTGTCAAATACACAACTTGGTT
TAATCAGAAAGCCGTTATTATCTGCTGTGGCCATGGGAGCCATTATTACTTATTTTCAGCCCATTTTGGATAATTTAGCT
CCTAACTTTAGTGTAGGCACTGTTATGGGAATGGCACTTGGTGCTGTGAGTTATGGGATAATTTTAATCACATGTGGCGG
TATTTCCACTGATGACTTGGAGAGTATCCCTAAGATTGGTCCAGGAATAGCAGGTTTTATTAAGAAAATCGGTCTTGGTT
CTTAA

Upstream 100 bases:

>100_bases
AAGAACTTCTATCGAATGATAAAAGTTGAAGCTGCTAATCTGGAGCAAACAAGTAAAGAGTTAATTGATAAAATTAATCA
CAATGAAGTGACAGCATATG

Downstream 100 bases:

>100_bases
GGATGGTTTTTATACCATTAAAAATTCCTTGAGCCATAATAGTTTTAAAACCATCATCTCTCATCCACCCTTCTTCTAAT
CTACTTGTAATGTTACTAAT

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: Stage III sporulation protein F [H]

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MAERLAKGAAILMAAGVVSKLLGAFYRIPLSRIIEAEGMGLYEMAYPIYSLLLIMAVSGVPIAVSKLVSEQIAQGKEKER
LRVFAVSLVFLFITGSFFSGLMYFLAEPISYGFLGDYRVIYSLRAISPAILIVSLMAAFRGYFQGLRIMSATAISQVTEQ
FVRVITMLALAYVLVERGIAYGAAGATFGAVTGGLSGLIIMLLLIPLYGVGPGLLNFFKAILSTLNLVRSVPLVIRLLSI
AIPVSLGALVMPVMQTLDAMIIPQRLQVAGFSPSEATHLYGYLSGMALRLVSLPTTLSLALGYSLVPALAESTALKKFDL
VRSQLGKAIRLTFIFSIPSSVGLFVMAERLTLLLFGYEGAGDPLRFLAAGTIFLSFQQVSASALQGTGYPVLPVKNLCYG
ALVNLVINYYLTAIPQIGIIGGAIGTCTGFLVASIFNFKDIKGKIGLSNTQLGLIRKPLLSAVAMGAIITYFQPILDNLA
PNFSVGTVMGMALGAVSYGIILITCGGISTDDLESIPKIGPGIAGFIKKIGLGS

Sequences:

>Translated_534_residues
MAERLAKGAAILMAAGVVSKLLGAFYRIPLSRIIEAEGMGLYEMAYPIYSLLLIMAVSGVPIAVSKLVSEQIAQGKEKER
LRVFAVSLVFLFITGSFFSGLMYFLAEPISYGFLGDYRVIYSLRAISPAILIVSLMAAFRGYFQGLRIMSATAISQVTEQ
FVRVITMLALAYVLVERGIAYGAAGATFGAVTGGLSGLIIMLLLIPLYGVGPGLLNFFKAILSTLNLVRSVPLVIRLLSI
AIPVSLGALVMPVMQTLDAMIIPQRLQVAGFSPSEATHLYGYLSGMALRLVSLPTTLSLALGYSLVPALAESTALKKFDL
VRSQLGKAIRLTFIFSIPSSVGLFVMAERLTLLLFGYEGAGDPLRFLAAGTIFLSFQQVSASALQGTGYPVLPVKNLCYG
ALVNLVINYYLTAIPQIGIIGGAIGTCTGFLVASIFNFKDIKGKIGLSNTQLGLIRKPLLSAVAMGAIITYFQPILDNLA
PNFSVGTVMGMALGAVSYGIILITCGGISTDDLESIPKIGPGIAGFIKKIGLGS
>Mature_533_residues
AERLAKGAAILMAAGVVSKLLGAFYRIPLSRIIEAEGMGLYEMAYPIYSLLLIMAVSGVPIAVSKLVSEQIAQGKEKERL
RVFAVSLVFLFITGSFFSGLMYFLAEPISYGFLGDYRVIYSLRAISPAILIVSLMAAFRGYFQGLRIMSATAISQVTEQF
VRVITMLALAYVLVERGIAYGAAGATFGAVTGGLSGLIIMLLLIPLYGVGPGLLNFFKAILSTLNLVRSVPLVIRLLSIA
IPVSLGALVMPVMQTLDAMIIPQRLQVAGFSPSEATHLYGYLSGMALRLVSLPTTLSLALGYSLVPALAESTALKKFDLV
RSQLGKAIRLTFIFSIPSSVGLFVMAERLTLLLFGYEGAGDPLRFLAAGTIFLSFQQVSASALQGTGYPVLPVKNLCYGA
LVNLVINYYLTAIPQIGIIGGAIGTCTGFLVASIFNFKDIKGKIGLSNTQLGLIRKPLLSAVAMGAIITYFQPILDNLAP
NFSVGTVMGMALGAVSYGIILITCGGISTDDLESIPKIGPGIAGFIKKIGLGS

Specific function: Involved, directly or indirectly, in spore cortex biosynthesis. Affects only indirectly the expression of late sporulation genes [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR002797
- InterPro:   IPR014249 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 56570; Mature: 56439

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERLAKGAAILMAAGVVSKLLGAFYRIPLSRIIEAEGMGLYEMAYPIYSLLLIMAVSGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
PIAVSKLVSEQIAQGKEKERLRVFAVSLVFLFITGSFFSGLMYFLAEPISYGFLGDYRVI
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
YSLRAISPAILIVSLMAAFRGYFQGLRIMSATAISQVTEQFVRVITMLALAYVLVERGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
YGAAGATFGAVTGGLSGLIIMLLLIPLYGVGPGLLNFFKAILSTLNLVRSVPLVIRLLSI
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIPVSLGALVMPVMQTLDAMIIPQRLQVAGFSPSEATHLYGYLSGMALRLVSLPTTLSLA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
LGYSLVPALAESTALKKFDLVRSQLGKAIRLTFIFSIPSSVGLFVMAERLTLLLFGYEGA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHEEECCCCC
GDPLRFLAAGTIFLSFQQVSASALQGTGYPVLPVKNLCYGALVNLVINYYLTAIPQIGII
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
GGAIGTCTGFLVASIFNFKDIKGKIGLSNTQLGLIRKPLLSAVAMGAIITYFQPILDNLA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNFSVGTVMGMALGAVSYGIILITCGGISTDDLESIPKIGPGIAGFIKKIGLGS
CCCCHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
AERLAKGAAILMAAGVVSKLLGAFYRIPLSRIIEAEGMGLYEMAYPIYSLLLIMAVSGV
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
PIAVSKLVSEQIAQGKEKERLRVFAVSLVFLFITGSFFSGLMYFLAEPISYGFLGDYRVI
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
YSLRAISPAILIVSLMAAFRGYFQGLRIMSATAISQVTEQFVRVITMLALAYVLVERGIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
YGAAGATFGAVTGGLSGLIIMLLLIPLYGVGPGLLNFFKAILSTLNLVRSVPLVIRLLSI
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIPVSLGALVMPVMQTLDAMIIPQRLQVAGFSPSEATHLYGYLSGMALRLVSLPTTLSLA
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
LGYSLVPALAESTALKKFDLVRSQLGKAIRLTFIFSIPSSVGLFVMAERLTLLLFGYEGA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHEEECCCCC
GDPLRFLAAGTIFLSFQQVSASALQGTGYPVLPVKNLCYGALVNLVINYYLTAIPQIGII
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH
GGAIGTCTGFLVASIFNFKDIKGKIGLSNTQLGLIRKPLLSAVAMGAIITYFQPILDNLA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNFSVGTVMGMALGAVSYGIILITCGGISTDDLESIPKIGPGIAGFIKKIGLGS
CCCCHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744050; 9384377 [H]