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The map label for this gene is hofB [C]

Identifier: 188586924

GI number: 188586924

Start: 2463322

End: 2465355

Strand: Reverse

Name: hofB [C]

Synonym: Nther_2316

Alternate gene names: 188586924

Gene position: 2465355-2463322 (Counterclockwise)

Preceding gene: 188586925

Following gene: 188586923

Centisome position: 77.88

GC content: 38.5

Gene sequence:

>2034_bases
ATGAGCAACAAGCTAGAAAAATTAAGACAAAGACAAGCAGCTTTACTGAAACAGGCTAGAGAAATTTGGGATAAGCAATT
TACTGAAAATAGAGAGTTAACTGAACAGGAATATAAACAGTACCAAAAATTGATGAAAGATATTAGCAAATTAAAGGATA
AAATAAACGAAGAGCTGCGACTAAAAGAGTTGGAAGAAAATTTAAATTCTTCTGAACAAGCGAACTTAAATGCAGAGGGT
AAACAGGAAGTGAACTTGGAATCAGAAGGTGAACAGCCAGTTAGTTCGGAGCCAGCTAGTTCGGAGACAGAAAGTGAACA
GCAATTAAACTCGGAGACAAAAAGTGAACATGATAATAGTGAACAAGCCGAAGGTCAGGAAACTACCGACAAGGTTGAAA
ATGAAGATGAAACTAAAACTGAAACTGTTAACAATCAAAGTCAAACTGATGATAGCAATACTCATGATAGTGCTTATGAT
AATGATCAAGACCCGAAACAGAAATGGATAGTAGGAATGGAAGAGAAAAACCAAAGTCAGCATGAATCGAGGAACCAAAA
AGCTGATGTTCAATTAGGAGAAGTGTTACCACCAGAAAATACTGAAACTGAAAATAATGAAAATGGTCGAGGAAAAGCCT
CATTACTATCAAGGCTGAATAAACGCAAGCAAGAAGCTGCCCTCATGGAATCAGCCAAGGGTTCTAATAAAAGCAATCAA
CCGAATAATCAAACAACTTCTCAACCTAAATCTGGAAAGAATGGTAGGGCTAAAGCTAACGGGCAAGTTGAAGATAAGGA
CGATTTTAGAGAACTAAAAAGTAGACTCCATAGGGCTTTAATTGATGAAATTGACAAGGATATATTGCAAGAATCTAACT
CAGAGGATGAAGAATTAGAACTAAAATCAGAAATCGAAGAAACGGTGGAAAATCTATTAGATCAAGAAGAAAAACCTTTA
TCTTCAACTGATCGTGACAAAATCAAAGCGGAAATCCTAAACGAAACTTTGGGATTCGGACCTATTACTCCTCTAATTGA
AGATGAAAATGTTAGTGAAATAATGGTAAATGGACATGATCAGGTTTATGTCGAGGAAAATGGCAAATTAAAGTTAACCG
ATATTAAATTTCGAGATGAACAGCATGTTATTCATGTGATTGAAAAAATTGTCGCTCCACTGGGACGAAGAATAGATGAA
AGTTCTCCCATGGTTGATGCCAGGCTACCTGACGGATCTAGGGTAAACGCCATTATCCCACCATTATCTTTGACAGGTCC
GGTAATTACTATCAGAAAATTTTCCGAAGATCCCTTAACAGCCAAGGATTTAATTAGTTTTGGAACTATGACTACTGAAA
TCTCAGACTTTTTGAAGAAATGTGTTAAGAATAGATTGAATGTGGTAGTCAGTGGTGGTACAGGAAGTGGAAAGACAACA
ACTTTAAACGTACTGTCATCTTTTATCCCACAAGATGAGCGGATTGTAACTATTGAGGATGCTGCCGAATTAACGCTACA
CCAGGATCATGTGGTAACTTTAGAAACCAAGCCACCTAATATGGAAGGTAAGGGAGCCATTACAATGAGAGAACTGGTGC
GTAATTCCCTGCGCATGAGACCTGACCGTATTGTAGTAGGAGAGGTCCGGGGAGGAGAGGCCCTAGACATGCTCCAAGCC
ATGAACACAGGTCATGATGGTTCTCTGACAACAGGTCACGCCAATTCCCCTAGAGATATGCTGTCTCGCCTGGAAACTAT
GGTTTTAATGGCAGGTATGGACCTACCAATCAGGGCAATAAGAGAACAAATTGCTTCAGCCATTGATTTAGTTGTCCAGC
AGAGTCGATTAGAGGATGGTTCAAGAAAAATAACGCAAGTTAGTGAAGTTCAGGGTATGGAAGGAGATGTTATTACAATG
CAAGACTTATTCACCTATAAACGCCAGGGTCGGGATTCCAAAAATAAAATTACTGGTAAACACGAGTCAACGGGCTTTAC
TCATGCTTTTTTAGAAAAAATGGAGATGAACTAA

Upstream 100 bases:

>100_bases
TAAGTGAATTCAGGAAGTTTTCCAATAAGGTTATTGAACATGAAAAAAGGGTTGAATAAAACTTGGTGGGTCTCGGATCT
GGGATAAGGGGGGTGACTTT

Downstream 100 bases:

>100_bases
TGAAAGGGGAATCTTTCATGCTCTATACGGTACTTATATTTTTGTTTGTGTTTTTACTCTATTATCATATTTATTTGGTA
GTTAGTAAGCCAAAACGCGA

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 677; Mature: 676

Protein sequence:

>677_residues
MSNKLEKLRQRQAALLKQAREIWDKQFTENRELTEQEYKQYQKLMKDISKLKDKINEELRLKELEENLNSSEQANLNAEG
KQEVNLESEGEQPVSSEPASSETESEQQLNSETKSEHDNSEQAEGQETTDKVENEDETKTETVNNQSQTDDSNTHDSAYD
NDQDPKQKWIVGMEEKNQSQHESRNQKADVQLGEVLPPENTETENNENGRGKASLLSRLNKRKQEAALMESAKGSNKSNQ
PNNQTTSQPKSGKNGRAKANGQVEDKDDFRELKSRLHRALIDEIDKDILQESNSEDEELELKSEIEETVENLLDQEEKPL
SSTDRDKIKAEILNETLGFGPITPLIEDENVSEIMVNGHDQVYVEENGKLKLTDIKFRDEQHVIHVIEKIVAPLGRRIDE
SSPMVDARLPDGSRVNAIIPPLSLTGPVITIRKFSEDPLTAKDLISFGTMTTEISDFLKKCVKNRLNVVVSGGTGSGKTT
TLNVLSSFIPQDERIVTIEDAAELTLHQDHVVTLETKPPNMEGKGAITMRELVRNSLRMRPDRIVVGEVRGGEALDMLQA
MNTGHDGSLTTGHANSPRDMLSRLETMVLMAGMDLPIRAIREQIASAIDLVVQQSRLEDGSRKITQVSEVQGMEGDVITM
QDLFTYKRQGRDSKNKITGKHESTGFTHAFLEKMEMN

Sequences:

>Translated_677_residues
MSNKLEKLRQRQAALLKQAREIWDKQFTENRELTEQEYKQYQKLMKDISKLKDKINEELRLKELEENLNSSEQANLNAEG
KQEVNLESEGEQPVSSEPASSETESEQQLNSETKSEHDNSEQAEGQETTDKVENEDETKTETVNNQSQTDDSNTHDSAYD
NDQDPKQKWIVGMEEKNQSQHESRNQKADVQLGEVLPPENTETENNENGRGKASLLSRLNKRKQEAALMESAKGSNKSNQ
PNNQTTSQPKSGKNGRAKANGQVEDKDDFRELKSRLHRALIDEIDKDILQESNSEDEELELKSEIEETVENLLDQEEKPL
SSTDRDKIKAEILNETLGFGPITPLIEDENVSEIMVNGHDQVYVEENGKLKLTDIKFRDEQHVIHVIEKIVAPLGRRIDE
SSPMVDARLPDGSRVNAIIPPLSLTGPVITIRKFSEDPLTAKDLISFGTMTTEISDFLKKCVKNRLNVVVSGGTGSGKTT
TLNVLSSFIPQDERIVTIEDAAELTLHQDHVVTLETKPPNMEGKGAITMRELVRNSLRMRPDRIVVGEVRGGEALDMLQA
MNTGHDGSLTTGHANSPRDMLSRLETMVLMAGMDLPIRAIREQIASAIDLVVQQSRLEDGSRKITQVSEVQGMEGDVITM
QDLFTYKRQGRDSKNKITGKHESTGFTHAFLEKMEMN
>Mature_676_residues
SNKLEKLRQRQAALLKQAREIWDKQFTENRELTEQEYKQYQKLMKDISKLKDKINEELRLKELEENLNSSEQANLNAEGK
QEVNLESEGEQPVSSEPASSETESEQQLNSETKSEHDNSEQAEGQETTDKVENEDETKTETVNNQSQTDDSNTHDSAYDN
DQDPKQKWIVGMEEKNQSQHESRNQKADVQLGEVLPPENTETENNENGRGKASLLSRLNKRKQEAALMESAKGSNKSNQP
NNQTTSQPKSGKNGRAKANGQVEDKDDFRELKSRLHRALIDEIDKDILQESNSEDEELELKSEIEETVENLLDQEEKPLS
STDRDKIKAEILNETLGFGPITPLIEDENVSEIMVNGHDQVYVEENGKLKLTDIKFRDEQHVIHVIEKIVAPLGRRIDES
SPMVDARLPDGSRVNAIIPPLSLTGPVITIRKFSEDPLTAKDLISFGTMTTEISDFLKKCVKNRLNVVVSGGTGSGKTTT
LNVLSSFIPQDERIVTIEDAAELTLHQDHVVTLETKPPNMEGKGAITMRELVRNSLRMRPDRIVVGEVRGGEALDMLQAM
NTGHDGSLTTGHANSPRDMLSRLETMVLMAGMDLPIRAIREQIASAIDLVVQQSRLEDGSRKITQVSEVQGMEGDVITMQ
DLFTYKRQGRDSKNKITGKHESTGFTHAFLEKMEMN

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=179, Percent_Identity=30.7262569832402, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 76152; Mature: 76020

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKLEKLRQRQAALLKQAREIWDKQFTENRELTEQEYKQYQKLMKDISKLKDKINEELR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKELEENLNSSEQANLNAEGKQEVNLESEGEQPVSSEPASSETESEQQLNSETKSEHDNS
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
EQAEGQETTDKVENEDETKTETVNNQSQTDDSNTHDSAYDNDQDPKQKWIVGMEEKNQSQ
HHHCCCHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCHHCCCHH
HESRNQKADVQLGEVLPPENTETENNENGRGKASLLSRLNKRKQEAALMESAKGSNKSNQ
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PNNQTTSQPKSGKNGRAKANGQVEDKDDFRELKSRLHRALIDEIDKDILQESNSEDEELE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LKSEIEETVENLLDQEEKPLSSTDRDKIKAEILNETLGFGPITPLIEDENVSEIMVNGHD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEECCCC
QVYVEENGKLKLTDIKFRDEQHVIHVIEKIVAPLGRRIDESSPMVDARLPDGSRVNAIIP
EEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEC
PLSLTGPVITIRKFSEDPLTAKDLISFGTMTTEISDFLKKCVKNRLNVVVSGGTGSGKTT
CCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCHH
TLNVLSSFIPQDERIVTIEDAAELTLHQDHVVTLETKPPNMEGKGAITMRELVRNSLRMR
HHHHHHHHCCCCCEEEEECCCHHHEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
PDRIVVGEVRGGEALDMLQAMNTGHDGSLTTGHANSPRDMLSRLETMVLMAGMDLPIRAI
CCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
REQIASAIDLVVQQSRLEDGSRKITQVSEVQGMEGDVITMQDLFTYKRQGRDSKNKITGK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCCCC
HESTGFTHAFLEKMEMN
CCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SNKLEKLRQRQAALLKQAREIWDKQFTENRELTEQEYKQYQKLMKDISKLKDKINEELR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKELEENLNSSEQANLNAEGKQEVNLESEGEQPVSSEPASSETESEQQLNSETKSEHDNS
HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
EQAEGQETTDKVENEDETKTETVNNQSQTDDSNTHDSAYDNDQDPKQKWIVGMEEKNQSQ
HHHCCCHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCHHCCCHH
HESRNQKADVQLGEVLPPENTETENNENGRGKASLLSRLNKRKQEAALMESAKGSNKSNQ
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PNNQTTSQPKSGKNGRAKANGQVEDKDDFRELKSRLHRALIDEIDKDILQESNSEDEELE
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LKSEIEETVENLLDQEEKPLSSTDRDKIKAEILNETLGFGPITPLIEDENVSEIMVNGHD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEECCCC
QVYVEENGKLKLTDIKFRDEQHVIHVIEKIVAPLGRRIDESSPMVDARLPDGSRVNAIIP
EEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEC
PLSLTGPVITIRKFSEDPLTAKDLISFGTMTTEISDFLKKCVKNRLNVVVSGGTGSGKTT
CCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCHH
TLNVLSSFIPQDERIVTIEDAAELTLHQDHVVTLETKPPNMEGKGAITMRELVRNSLRMR
HHHHHHHHCCCCCEEEEECCCHHHEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCC
PDRIVVGEVRGGEALDMLQAMNTGHDGSLTTGHANSPRDMLSRLETMVLMAGMDLPIRAI
CCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
REQIASAIDLVVQQSRLEDGSRKITQVSEVQGMEGDVITMQDLFTYKRQGRDSKNKITGK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCCCCC
HESTGFTHAFLEKMEMN
CCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]