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The map label for this gene is ygeV [H]

Identifier: 188586914

GI number: 188586914

Start: 2449230

End: 2451035

Strand: Reverse

Name: ygeV [H]

Synonym: Nther_2305

Alternate gene names: 188586914

Gene position: 2451035-2449230 (Counterclockwise)

Preceding gene: 188586915

Following gene: 188586913

Centisome position: 77.43

GC content: 36.6

Gene sequence:

>1806_bases
TTGATTTTTGTTGCTGTAAAGAGGTGGGGTGTTCCAGTGACCAAGATTGATAACAAAGGAGTACAGCAGATAGCTGAAAC
GATTTCTGATGTACTTCTTTTGGATGTGACGATTGTTGATTCTGACTTAATTAGGGTAGCCGGGACTGGCAGCTACAAAA
ACAGAATAGGGGAGAGGTTACCCCCAGGATCTGGTTATGAATTTTCTATTAAATCAAGACAAGCTACAACTATTAACAAA
CCTGGTAAAAATCAAATCTGTTATTCATGTACAAAAAAATCGGAGTGTCAAGAAAAAGCCCATATGTTATCGCCAATTAA
CTTAAATGGACAGGTAATTGCAATTATAGGAATTACTGCTTTTACCGAATCACAAAAACAAGATCTGACTTACGCAGAAG
AAAAATATAGAAGCTTTATCAAAAAAATGTCTGAACTGCTTGCCGATAGTTTTTCCAATGAACAAATCATACTGGAAAAG
ACTAAAGCTTATGCCCAGGTAAGCGCCATTGTCAATTCTGTTTATGAGGGAATTCTGGCAGTTGATGATTATAATGAAGT
TATTGCTTGTAATGATGCTGTGCGAGATTTACTGGATATTAGAGGAGATATTATTGGTCAAAATGTGGAAAATGTTGTAC
CTGAACTACCCTTTGAAGGGGTAATAACTACCGGGACAAGTAAACTAGGGCACGAACAGTACTTTTCTAAAGTAGGGATT
CACTGTTTGGTCAATATGAAACCTATTAAAATGAATAATAAAGTTGTAGGTGCAGTAGCTACTGTCAGGGACACTAAAGA
GATTGAAAAACTCGCTTTTAGGGTTAGTGGTAATACAGCGGGATTTTCATTCAATGCAATTATTTCTAAAAATAATAATA
TCAAAGAGTTAAAGGAAAAGGCCAAAAAAGTTAGTCAAACGGATTCTACAGTACTTATCCGAGGTGAGAGTGGAACAGGC
AAAGAACTTTATGCCAGGGCAATTCATTCTGCTAGTCCTAGGTGGAAAGGACCATTTGTTCCCGTTCACTGCGGGGCTAT
ACCGGAAACATTACTGGAAAGTGAATTATTTGGTTATGAATCGGGTGCTTTTACAGGAGCTAAAAAAGGCGGGAAAATAG
GTAAGTTTGAATTGGCTGAAGGTGGAACGATTTTTCTAGATGAGATTGGGGACATGCCGATACATTTACAGACAAAACTG
CTTAGAGTTATGCAAGATGGGACTTTTGAAAGGATAGGAAGCCCTGAAACTATTAAAATAGACGTGCGGGTTCTTGCCGC
TACTCACCAGCCCTTGGAAGAGTTTATTGAAAAAAACAAGTTTAGAAGAGATTTATTTTATAGATTGAATGTGGTACCTC
TTTTTATTCCCGCTCTGAGGGAACGACGAGAGGATATTTCACTACTTCTTAATCATTTTCTAAATAAATATGCCAATAAA
TTAAAACGGGAACAGCCAGCTTTGTCACGGGAATTAATGAGCTTTTTAGAGCAATATAGCTGGCCTGGGAATGTGAGAGA
ACTGGAAAATGTAGCGGAATATTTTATAAATATTAATGAGAAAGGTTATTTAGATTTAGGAGATTTACCCAAAAATATGA
AAGATAAGCTACTAGAAACCCAGGATTATCAAAAAAATGTTGGAGATGATGAGATCTTACCTCTAGAGGAATTAGAAAAA
AGGAGTTTCGAAAAAGCAGTTAAAATCTATGGTATCAGTGAACAAGGAAAACAACTCATGGCAGGAAAATTAGGTGTTAG
TAGAGCTACAGTTTATCGTAAACTAAAAAAATACGGCCTGATATAA

Upstream 100 bases:

>100_bases
AAGATCCAGTAGAACCTACTACTAATATAACGCATATGACATGGCATATCCTGTTAGGGGGATTAAGTGCGTTATTGATA
ATCTTATTAGGAGATGTCTT

Downstream 100 bases:

>100_bases
ACAGTCTCAAATTGAATTTTTGTATCTCAGATTGAGATACAAGGGGGAATATTGTGTAATCTGAAAATCACCCTTTAATA
CAGTGCTTTATTAAAAGCCG

Product: putative sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MIFVAVKRWGVPVTKIDNKGVQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERLPPGSGYEFSIKSRQATTINK
PGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEK
TKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDIRGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGI
HCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTG
KELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKL
LRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANK
LKREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKGYLDLGDLPKNMKDKLLETQDYQKNVGDDEILPLEELEK
RSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGLI

Sequences:

>Translated_601_residues
MIFVAVKRWGVPVTKIDNKGVQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERLPPGSGYEFSIKSRQATTINK
PGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEK
TKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDIRGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGI
HCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTG
KELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKL
LRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANK
LKREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKGYLDLGDLPKNMKDKLLETQDYQKNVGDDEILPLEELEK
RSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGLI
>Mature_601_residues
MIFVAVKRWGVPVTKIDNKGVQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERLPPGSGYEFSIKSRQATTINK
PGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEK
TKAYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDIRGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGI
HCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTG
KELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKL
LRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANK
LKREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKGYLDLGDLPKNMKDKLLETQDYQKNVGDDEILPLEELEK
RSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGLI

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=608, Percent_Identity=34.046052631579, Blast_Score=339, Evalue=3e-94,
Organism=Escherichia coli, GI1788550, Length=341, Percent_Identity=43.108504398827, Blast_Score=268, Evalue=5e-73,
Organism=Escherichia coli, GI87082117, Length=324, Percent_Identity=43.5185185185185, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI1790437, Length=355, Percent_Identity=39.1549295774648, Blast_Score=247, Evalue=2e-66,
Organism=Escherichia coli, GI1790299, Length=334, Percent_Identity=42.5149700598802, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI1788905, Length=317, Percent_Identity=44.1640378548896, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1789087, Length=333, Percent_Identity=41.7417417417417, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1786524, Length=375, Percent_Identity=37.3333333333333, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1787583, Length=379, Percent_Identity=35.8839050131926, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI87082152, Length=224, Percent_Identity=48.2142857142857, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI87081872, Length=228, Percent_Identity=42.5438596491228, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI87081858, Length=469, Percent_Identity=27.2921108742004, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789828, Length=346, Percent_Identity=28.6127167630058, Blast_Score=125, Evalue=8e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003018
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 67334; Mature: 67334

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFVAVKRWGVPVTKIDNKGVQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERL
CEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHCCC
PPGSGYEFSIKSRQATTINKPGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITA
CCCCCCEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEEH
FTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEKTKAYAQVSAIVNSVYEGILA
HCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCEEE
VDDYNEVIACNDAVRDLLDIRGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGI
ECCCCCEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCC
HCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEK
EEEEEEEEEEECCEEEEEHHHHHHHHHHHHHHEEECCCCCCEEEEEEEECCCCHHHHHHH
AKKVSQTDSTVLIRGESGTGKELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYE
HHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCC
SGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKLLRVMQDGTFERIGSPETIKI
CCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEE
DVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANK
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKGYLDLGDLPKNMKDKLLET
HHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCEECCCCCHHHHHHHHCH
QDYQKNVGDDEILPLEELEKRSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
I
C
>Mature Secondary Structure
MIFVAVKRWGVPVTKIDNKGVQQIAETISDVLLLDVTIVDSDLIRVAGTGSYKNRIGERL
CEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCHHHHHHHCCC
PPGSGYEFSIKSRQATTINKPGKNQICYSCTKKSECQEKAHMLSPINLNGQVIAIIGITA
CCCCCCEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCEEEEEEEEH
FTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEKTKAYAQVSAIVNSVYEGILA
HCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCEEE
VDDYNEVIACNDAVRDLLDIRGDIIGQNVENVVPELPFEGVITTGTSKLGHEQYFSKVGI
ECCCCCEEECCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCC
HCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGNTAGFSFNAIISKNNNIKELKEK
EEEEEEEEEEECCEEEEEHHHHHHHHHHHHHHEEECCCCCCEEEEEEEECCCCHHHHHHH
AKKVSQTDSTVLIRGESGTGKELYARAIHSASPRWKGPFVPVHCGAIPETLLESELFGYE
HHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHCCCC
SGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQTKLLRVMQDGTFERIGSPETIKI
CCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHCCCCCEEEE
DVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPALRERREDISLLLNHFLNKYANK
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKREQPALSRELMSFLEQYSWPGNVRELENVAEYFININEKGYLDLGDLPKNMKDKLLET
HHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCEECCCCCHHHHHHHHCH
QDYQKNVGDDEILPLEELEKRSFEKAVKIYGISEQGKQLMAGKLGVSRATVYRKLKKYGL
HHHHHCCCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]