Click here to switch to the map view.

The map label for this gene is swrAB [H]

Identifier: 188586801

GI number: 188586801

Start: 2326574

End: 2327893

Strand: Reverse

Name: swrAB [H]

Synonym: Nther_2192

Alternate gene names: 188586801

Gene position: 2327893-2326574 (Counterclockwise)

Preceding gene: 188586802

Following gene: 188586800

Centisome position: 73.54

GC content: 39.77

Gene sequence:

>1320_bases
ATGCAGGATTTTAACTTGATAACATTACTACAACTCCTTGGACAAAGTTTAGTGATGCCTCATCTGCCGGTACTTTATAT
TCTAGTTACACTGTTGGTATTTCGCCAGTATCGGCGTTCAGTCAAGATGGAACAAAAATTGTTTGGGAGAATAAAAAACA
GTCCCGTGAAATTAACTCTTTACTCCATAGGTTTGGGAATTATTGCGGGTTTATTTGCCAGTATTATATTAATCTTTTTC
GGAGTTAACTTGATTGAGTTGGGAATCCCCTATGTATGGGCCATGGTAATTATACTCTTACTTTTTCATCCAAGATATAT
GTGTTTTGCCTATGGCGGGGGTGTTATCGGCTTAATCAGCTTGATACTGTCCCAACTTGCTCAATATTATCCGGAGATTT
TAGAGTTTTGGATTGTCAATGATCTAGTCAGAATCAATGTACCCGCACTGGTCACTTTAGTAGCAATTCTTCACTTAACA
GAAAGTTTTTTGATTTTGGTCAGTGGACATATAAGTCCAAGTCCTATTTATGTCAGACACGAACAGGAAGGGATCGTCGG
AGGGTTCAGCCTGCAAAAATTTTGGCCTCTTCCGGTTATGGGGATAATCGGCTGGTATTATCCAGAAGCTAATATTGACT
TTGCCATGTCCATGCCCGATTGGTGGCCTATCGTGGGTTCTACCATTACTGCTCCTGAGGGATATCAAATGATGTATCAA
TTTTTACCTGTTGTTGTTGGATTGGGATATGGAGATATGGCCATATCCAGCAATCCCAAGGCCAAGAGTAAGAGTTCCGC
CTTTAACCTGGCATTGTACAGCATTACTTTATTAGTACTGGCTGTAATATCCTCTTATTACGGTCCCCTAACCTGGTTGG
CGGTATTGCTGCTACCTTTAGGACATGAAGCCATTATTATTGTCGGTAACTCCCGGGAGTTTTCTCGTAAACCCCTTTAT
TCACAACATGATCGAGGTATTAAAGTCCTAGATGTACTCCCTAATAGTGTAGGTCAACACATGGGGCTGAAATCTGGAGA
CGTGATTTTAAGTATTAATAATATTCCCGTCTCCAATAAGCAGGACTTATTGACAAATCTCTATCAAAGTCAACCCTATG
TACGGATGAATGTGGAAACTCTGGATGGTGAACAAAAATTTGTAAAAGCCCCTCTGTATGAGCACAGTACTCATTTGGGA
CTGATATTGTCACCAGAAACCGATGGTCATGGTAACAGGTATATAAATCCAGGGGGCAAAAATAGATTTGAAGGATTATT
AAGAAAGCTATTGGGTAAAAGTAAAAAGAAAAATGGATAA

Upstream 100 bases:

>100_bases
TTATGGATATACATGGTATAAATGTGTCTTTTTTTGGTTAGCGGGTGCTGGAAGTTTAATTGCCCGGGAAATAATGTTGA
GATAAGAGAGGTTGAATAAA

Downstream 100 bases:

>100_bases
AATTGGTTTTGTTTGTTGTCGACGATTTGTTTAAAGACTGGAGGAGATAAAGGTGCTCAATGAACTGGTACCGGAAAGGG
TTTATGTTTATCAGGCTCCG

Product: PDZ/DHR/GLGF domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MQDFNLITLLQLLGQSLVMPHLPVLYILVTLLVFRQYRRSVKMEQKLFGRIKNSPVKLTLYSIGLGIIAGLFASIILIFF
GVNLIELGIPYVWAMVIILLLFHPRYMCFAYGGGVIGLISLILSQLAQYYPEILEFWIVNDLVRINVPALVTLVAILHLT
ESFLILVSGHISPSPIYVRHEQEGIVGGFSLQKFWPLPVMGIIGWYYPEANIDFAMSMPDWWPIVGSTITAPEGYQMMYQ
FLPVVVGLGYGDMAISSNPKAKSKSSAFNLALYSITLLVLAVISSYYGPLTWLAVLLLPLGHEAIIIVGNSREFSRKPLY
SQHDRGIKVLDVLPNSVGQHMGLKSGDVILSINNIPVSNKQDLLTNLYQSQPYVRMNVETLDGEQKFVKAPLYEHSTHLG
LILSPETDGHGNRYINPGGKNRFEGLLRKLLGKSKKKNG

Sequences:

>Translated_439_residues
MQDFNLITLLQLLGQSLVMPHLPVLYILVTLLVFRQYRRSVKMEQKLFGRIKNSPVKLTLYSIGLGIIAGLFASIILIFF
GVNLIELGIPYVWAMVIILLLFHPRYMCFAYGGGVIGLISLILSQLAQYYPEILEFWIVNDLVRINVPALVTLVAILHLT
ESFLILVSGHISPSPIYVRHEQEGIVGGFSLQKFWPLPVMGIIGWYYPEANIDFAMSMPDWWPIVGSTITAPEGYQMMYQ
FLPVVVGLGYGDMAISSNPKAKSKSSAFNLALYSITLLVLAVISSYYGPLTWLAVLLLPLGHEAIIIVGNSREFSRKPLY
SQHDRGIKVLDVLPNSVGQHMGLKSGDVILSINNIPVSNKQDLLTNLYQSQPYVRMNVETLDGEQKFVKAPLYEHSTHLG
LILSPETDGHGNRYINPGGKNRFEGLLRKLLGKSKKKNG
>Mature_439_residues
MQDFNLITLLQLLGQSLVMPHLPVLYILVTLLVFRQYRRSVKMEQKLFGRIKNSPVKLTLYSIGLGIIAGLFASIILIFF
GVNLIELGIPYVWAMVIILLLFHPRYMCFAYGGGVIGLISLILSQLAQYYPEILEFWIVNDLVRINVPALVTLVAILHLT
ESFLILVSGHISPSPIYVRHEQEGIVGGFSLQKFWPLPVMGIIGWYYPEANIDFAMSMPDWWPIVGSTITAPEGYQMMYQ
FLPVVVGLGYGDMAISSNPKAKSKSSAFNLALYSITLLVLAVISSYYGPLTWLAVLLLPLGHEAIIIVGNSREFSRKPLY
SQHDRGIKVLDVLPNSVGQHMGLKSGDVILSINNIPVSNKQDLLTNLYQSQPYVRMNVETLDGEQKFVKAPLYEHSTHLG
LILSPETDGHGNRYINPGGKNRFEGLLRKLLGKSKKKNG

Specific function: Required for surface-adhering cells to differentiate into hyperflagellated and elongated swarm cells [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49045; Mature: 49045

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFNLITLLQLLGQSLVMPHLPVLYILVTLLVFRQYRRSVKMEQKLFGRIKNSPVKLTL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH
YSIGLGIIAGLFASIILIFFGVNLIELGIPYVWAMVIILLLFHPRYMCFAYGGGVIGLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
LILSQLAQYYPEILEFWIVNDLVRINVPALVTLVAILHLTESFLILVSGHISPSPIYVRH
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEE
EQEGIVGGFSLQKFWPLPVMGIIGWYYPEANIDFAMSMPDWWPIVGSTITAPEGYQMMYQ
CCCCCEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHH
FLPVVVGLGYGDMAISSNPKAKSKSSAFNLALYSITLLVLAVISSYYGPLTWLAVLLLPL
HHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
GHEAIIIVGNSREFSRKPLYSQHDRGIKVLDVLPNSVGQHMGLKSGDVILSINNIPVSNK
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCCCCH
QDLLTNLYQSQPYVRMNVETLDGEQKFVKAPLYEHSTHLGLILSPETDGHGNRYINPGGK
HHHHHHHHHCCCEEEEEEEECCCCHHHHHCCCHHCCCCEEEEECCCCCCCCCCEECCCCC
NRFEGLLRKLLGKSKKKNG
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQDFNLITLLQLLGQSLVMPHLPVLYILVTLLVFRQYRRSVKMEQKLFGRIKNSPVKLTL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH
YSIGLGIIAGLFASIILIFFGVNLIELGIPYVWAMVIILLLFHPRYMCFAYGGGVIGLIS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH
LILSQLAQYYPEILEFWIVNDLVRINVPALVTLVAILHLTESFLILVSGHISPSPIYVRH
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEE
EQEGIVGGFSLQKFWPLPVMGIIGWYYPEANIDFAMSMPDWWPIVGSTITAPEGYQMMYQ
CCCCCEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCCCCCHHHHHHH
FLPVVVGLGYGDMAISSNPKAKSKSSAFNLALYSITLLVLAVISSYYGPLTWLAVLLLPL
HHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
GHEAIIIVGNSREFSRKPLYSQHDRGIKVLDVLPNSVGQHMGLKSGDVILSINNIPVSNK
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCCCCH
QDLLTNLYQSQPYVRMNVETLDGEQKFVKAPLYEHSTHLGLILSPETDGHGNRYINPGGK
HHHHHHHHHCCCEEEEEEEECCCCHHHHHCCCHHCCCCEEEEECCCCCCCCCCEECCCCC
NRFEGLLRKLLGKSKKKNG
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]