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The map label for this gene is yomI [H]

Identifier: 188586729

GI number: 188586729

Start: 2240320

End: 2241291

Strand: Reverse

Name: yomI [H]

Synonym: Nther_2119

Alternate gene names: 188586729

Gene position: 2241291-2240320 (Counterclockwise)

Preceding gene: 188586731

Following gene: 188586728

Centisome position: 70.8

GC content: 37.65

Gene sequence:

>972_bases
ATGATAATCATTAGTAAACCAGGTTTTTTAGTCTATTCATTTTTTATTGCTATCACTTTGTTAGTCGCTTTCCCCTCGAT
AAGTTTTGGGGCAATAGTAGAAGAAATTGAAGATTATGAAACTGTAGTTTTTTTAAATGATTCTCAGGTAATTTTTCAGG
ATGTTACTCCTTACATAGATGATAATAATAGAACTATGATTCCCCTTCGCTTTATATCTGAAGAGTTAGACTCAAAAGTT
GATTGGTTTCCTGATGAAGATAAAATTATCGTGGAAGATGAAGATATGGAGTTGAAAATGTTCATTGGTTCAAACAATTA
TAAATTAAATGATGAGATGCAGAAGATGGAAACGAGGCCAGAGCTAGTTGATGGGCGTACCATGGTTCCGATAAGAGTGA
TTAACCGTTGCTTCGATCTAGATTTGGTATACAGATCCCATCAAGGATTGGGATTGGTCTTTAATTTTACCGAAGGACAA
GCTCGTGAACGAAAAGAAGCAGTAATCCAACAGGTAAAAAAAGAGCTTGATGAAATTAAGGAAGAAAAAGGATTAGAAAG
TTTGGATGCCAGTCATCGAGAAATACACAGTCACGAAAAACCTGAGTTTTTATTCCCAATAGAAAACGGGATGAATGAAA
TATCTTCTAAATATGGCTGGCGAAGCCGAGGATTTCACAGTGGAATAGACATTGCAGTTTCTCATGGGACAAGCATTAAA
GCGGCAGAATCCGGGACTGTAACTTTTTCGGGTTGGCGAGGATCTTATGGGAATCTGATAATCATAGAACATCCAGGTGA
CTATGAAACTTATTATGCTCACAATGCCGGCCACACTGTGAGTGTGGGGCAAAGTGTGGAAAAAGGTGAAGTCATAGGTC
ATGTAGGCAATAGCGGTAACGCTACCGGGTCTCATTTGCACTTTGAAATTCGTCGAAACGGTGAACATGTGAATCCTTTA
GATTATTATTAA

Upstream 100 bases:

>100_bases
AATGTCATAAAATGATGACAGCAAATTTTGACAAATTATAGTATCAAGTTTTTTAAATTTATGATATTATACCTTTTGGA
GTCTAATTAAAATTAAGGAG

Downstream 100 bases:

>100_bases
TCTAATTCAGTTTCCATGGTTGAATTAGGATATCCAGCAGTATAGAAATTAATAAGAGACTGCTAAAGGACTTGAGTTAA
TTAATGGCGAAGTGACTTAC

Product: Peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MIIISKPGFLVYSFFIAITLLVAFPSISFGAIVEEIEDYETVVFLNDSQVIFQDVTPYIDDNNRTMIPLRFISEELDSKV
DWFPDEDKIIVEDEDMELKMFIGSNNYKLNDEMQKMETRPELVDGRTMVPIRVINRCFDLDLVYRSHQGLGLVFNFTEGQ
ARERKEAVIQQVKKELDEIKEEKGLESLDASHREIHSHEKPEFLFPIENGMNEISSKYGWRSRGFHSGIDIAVSHGTSIK
AAESGTVTFSGWRGSYGNLIIIEHPGDYETYYAHNAGHTVSVGQSVEKGEVIGHVGNSGNATGSHLHFEIRRNGEHVNPL
DYY

Sequences:

>Translated_323_residues
MIIISKPGFLVYSFFIAITLLVAFPSISFGAIVEEIEDYETVVFLNDSQVIFQDVTPYIDDNNRTMIPLRFISEELDSKV
DWFPDEDKIIVEDEDMELKMFIGSNNYKLNDEMQKMETRPELVDGRTMVPIRVINRCFDLDLVYRSHQGLGLVFNFTEGQ
ARERKEAVIQQVKKELDEIKEEKGLESLDASHREIHSHEKPEFLFPIENGMNEISSKYGWRSRGFHSGIDIAVSHGTSIK
AAESGTVTFSGWRGSYGNLIIIEHPGDYETYYAHNAGHTVSVGQSVEKGEVIGHVGNSGNATGSHLHFEIRRNGEHVNPL
DYY
>Mature_323_residues
MIIISKPGFLVYSFFIAITLLVAFPSISFGAIVEEIEDYETVVFLNDSQVIFQDVTPYIDDNNRTMIPLRFISEELDSKV
DWFPDEDKIIVEDEDMELKMFIGSNNYKLNDEMQKMETRPELVDGRTMVPIRVINRCFDLDLVYRSHQGLGLVFNFTEGQ
ARERKEAVIQQVKKELDEIKEEKGLESLDASHREIHSHEKPEFLFPIENGMNEISSKYGWRSRGFHSGIDIAVSHGTSIK
AAESGTVTFSGWRGSYGNLIIIEHPGDYETYYAHNAGHTVSVGQSVEKGEVIGHVGNSGNATGSHLHFEIRRNGEHVNPL
DYY

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Attached To The Inner Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=103, Percent_Identity=47.5728155339806, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082174, Length=101, Percent_Identity=45.5445544554455, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87082297, Length=92, Percent_Identity=40.2173913043478, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=37.8947368421053, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 36732; Mature: 36732

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIISKPGFLVYSFFIAITLLVAFPSISFGAIVEEIEDYETVVFLNDSQVIFQDVTPYID
CEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCEE
DNNRTMIPLRFISEELDSKVDWFPDEDKIIVEDEDMELKMFIGSNNYKLNDEMQKMETRP
CCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEECHHHHHHHCCC
ELVDGRTMVPIRVINRCFDLDLVYRSHQGLGLVFNFTEGQARERKEAVIQQVKKELDEIK
CHHCCCEEEHHHHHHHHHCHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EEKGLESLDASHREIHSHEKPEFLFPIENGMNEISSKYGWRSRGFHSGIDIAVSHGTSIK
HHCCCHHHCCHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEE
AAESGTVTFSGWRGSYGNLIIIEHPGDYETYYAHNAGHTVSVGQSVEKGEVIGHVGNSGN
ECCCCEEEEECCCCCCCCEEEEECCCCCCEEEEECCCCEEECCCCCCCCCEEEEECCCCC
ATGSHLHFEIRRNGEHVNPLDYY
CCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MIIISKPGFLVYSFFIAITLLVAFPSISFGAIVEEIEDYETVVFLNDSQVIFQDVTPYID
CEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCEEEEECCCCCEE
DNNRTMIPLRFISEELDSKVDWFPDEDKIIVEDEDMELKMFIGSNNYKLNDEMQKMETRP
CCCCEEEEHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEECHHHHHHHCCC
ELVDGRTMVPIRVINRCFDLDLVYRSHQGLGLVFNFTEGQARERKEAVIQQVKKELDEIK
CHHCCCEEEHHHHHHHHHCHHEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
EEKGLESLDASHREIHSHEKPEFLFPIENGMNEISSKYGWRSRGFHSGIDIAVSHGTSIK
HHCCCHHHCCHHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEE
AAESGTVTFSGWRGSYGNLIIIEHPGDYETYYAHNAGHTVSVGQSVEKGEVIGHVGNSGN
ECCCCEEEEECCCCCCCCEEEEECCCCCCEEEEECCCCEEECCCCCCCCCEEEEECCCCC
ATGSHLHFEIRRNGEHVNPLDYY
CCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]