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The map label for this gene is xerC [H]

Identifier: 188586682

GI number: 188586682

Start: 2192287

End: 2192892

Strand: Reverse

Name: xerC [H]

Synonym: Nther_2072

Alternate gene names: 188586682

Gene position: 2192892-2192287 (Counterclockwise)

Preceding gene: 188586684

Following gene: 188586681

Centisome position: 69.27

GC content: 30.2

Gene sequence:

>606_bases
ATGATTCATAAGACAAATAAACTTATCTCGGAAAAAGATGGATACTGGTTGATACTTCAACCCGATACTAGTACTTTTCA
AGGCATTAGAGATTTTTTATTGATAAGGGCAATGCTCAACTATGGATTAAGATTATATGAGGTGACCCAGCTAAAATGGC
AAGATATAGATTGGTATAATGAACGACTAGTTGTTGCCAATAGTCGTGGTGCTAATAGTAGAATGTTAGAATTACAGAAA
ACTGATCTTGAAATGTTAAAAGAGTGGTATTATGCAAGATATGAGAGAGAAGACAATAGCGATTCTATGGATAAAGTATA
TGACTATTATGTATTTACAACCCTACTAGGTAAAAGATTAACTGCTCGATATATTTGTAAAATATTGACTATATATGGAA
GGAAAAGTTTATTAAATCAAAATATTAAGCCCTCAGTATTGAGAAATACTTTTGCTGTAAATTTTTACAATGATTTTCAA
GATATGAGAAAACTTCAATTGAAACTTGGACACGAAAATATTAAAACCACCAAGAGATACTTACAAATTTATGATCCCAA
TATTGCCATGCGACCTATGAAATTGAATATTATTTCTATGTTATGA

Upstream 100 bases:

>100_bases
AGAAAATCCTTCAAAAAAATTGGATATTTTAGGAGGATTTTTTAAAAATATAACTAATAGAAATATATTGAAAGGATTTA
GTTAGGCTAGGGGGAGTAAT

Downstream 100 bases:

>100_bases
TCCTGTGATTTAAAAAGAAACTGGCCCTAGTTTTTGGGTGCCAGTTTTTTTATTATAGCTATGCTAAAATTGATAGTGTC
TTTAATATTGAAACACCAAA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MIHKTNKLISEKDGYWLILQPDTSTFQGIRDFLLIRAMLNYGLRLYEVTQLKWQDIDWYNERLVVANSRGANSRMLELQK
TDLEMLKEWYYARYEREDNSDSMDKVYDYYVFTTLLGKRLTARYICKILTIYGRKSLLNQNIKPSVLRNTFAVNFYNDFQ
DMRKLQLKLGHENIKTTKRYLQIYDPNIAMRPMKLNIISML

Sequences:

>Translated_201_residues
MIHKTNKLISEKDGYWLILQPDTSTFQGIRDFLLIRAMLNYGLRLYEVTQLKWQDIDWYNERLVVANSRGANSRMLELQK
TDLEMLKEWYYARYEREDNSDSMDKVYDYYVFTTLLGKRLTARYICKILTIYGRKSLLNQNIKPSVLRNTFAVNFYNDFQ
DMRKLQLKLGHENIKTTKRYLQIYDPNIAMRPMKLNIISML
>Mature_201_residues
MIHKTNKLISEKDGYWLILQPDTSTFQGIRDFLLIRAMLNYGLRLYEVTQLKWQDIDWYNERLVVANSRGANSRMLELQK
TDLEMLKEWYYARYEREDNSDSMDKVYDYYVFTTLLGKRLTARYICKILTIYGRKSLLNQNIKPSVLRNTFAVNFYNDFQ
DMRKLQLKLGHENIKTTKRYLQIYDPNIAMRPMKLNIISML

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=168, Percent_Identity=27.9761904761905, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 24184; Mature: 24184

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHKTNKLISEKDGYWLILQPDTSTFQGIRDFLLIRAMLNYGLRLYEVTQLKWQDIDWYN
CCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECEECCCCCCC
ERLVVANSRGANSRMLELQKTDLEMLKEWYYARYEREDNSDSMDKVYDYYVFTTLLGKRL
CEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
TARYICKILTIYGRKSLLNQNIKPSVLRNTFAVNFYNDFQDMRKLQLKLGHENIKTTKRY
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEHHHHHHHHHHHHHHCCCHHHHHHHH
LQIYDPNIAMRPMKLNIISML
HEEECCCEEECCEEEEEEECC
>Mature Secondary Structure
MIHKTNKLISEKDGYWLILQPDTSTFQGIRDFLLIRAMLNYGLRLYEVTQLKWQDIDWYN
CCCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECEECCCCCCC
ERLVVANSRGANSRMLELQKTDLEMLKEWYYARYEREDNSDSMDKVYDYYVFTTLLGKRL
CEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
TARYICKILTIYGRKSLLNQNIKPSVLRNTFAVNFYNDFQDMRKLQLKLGHENIKTTKRY
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEEHHHHHHHHHHHHHHCCCHHHHHHHH
LQIYDPNIAMRPMKLNIISML
HEEECCCEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12828649 [H]