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The map label for this gene is yjcD [H]

Identifier: 188586139

GI number: 188586139

Start: 1590031

End: 1591758

Strand: Reverse

Name: yjcD [H]

Synonym: Nther_1515

Alternate gene names: 188586139

Gene position: 1591758-1590031 (Counterclockwise)

Preceding gene: 188586140

Following gene: 188586138

Centisome position: 50.28

GC content: 31.6

Gene sequence:

>1728_bases
GTGGAATTCTCAAAGCAACAACAAGAATTCTTGAAAGCTGAAGGAAACTGTTTAGTTCTAGGTGGACCTGGTTCAGGAAA
AACCACAACTTCATTAATAAAAGCAAAGAATTTAATCAAAAATGAACACTTAAAAAATGAACAAAAAATTTTGTTTTTAA
GCTTTGCTAGAGCTACAATAGCTAGGGTAGAGGAACAGGCAGGTTTATATGAATCAGATCTTATTAATAAAAGTATCGAA
GTAAATACTTATCACGGATTTGCATGGAATATTTTAAGGAGTCACGGTTACTTACTCAATTCAATAAGCCCTCTTAAAAT
TCTACCTCCTCAAGAAGCTTGTTCAAGGTTTTCTACCATAAGAGATGGAAAAAGGCGTAGGAAAGAAAAAATAAAACTTT
TTAAAGAAGAAGGCGTAGTGGATTTTGATTTATTTGCTGAACTGTGTTATGAATTGCTAAGCAGAAGTGATAAGCTATTA
AATGTTATATCTAGTTCATACCCATACATTATTCTCGATGAATTTCAAGATACAAGTTATGACGAATGGAGATTAATTAA
CATTTTAGGGAAAAGAAGTACATTGGTTGCACTTGCCGATCCAGATCAAAGAATATATGAATTTAGAGGGGCTGACCCTG
CAAGAATTAGCGATTATATTAAGGAATTTGAGCCTTTTCAGTTTGACTTTGCTAGTATAAATAATAGAAGTAATGGTACC
GATCTAATTCAGTTTGGGAATGATTTACTATCTGGAGCAAATAAAAGCAAAAATTATAGAAACGTAAAAATAATAAAATA
TGATTTTAAAAAGGGTAAAGGGAGACATTCAAAACTAAAGTATCAAACACTTAAAGTTAGAGATAAATTAAGAAAACATA
AAAAAAATTGGTCGTTAGCCATTTTGGTACCGACAAACAACTTAATGGCTGATGTATCAAACTACCTTGGTAGTTGGCAA
TCTTTTAAAAGTGGCAACAAACTTCCAGGACTCAAACACCATGTTGCTGTCAGTAAAGAAGGTACACTACTTGCAGCAGA
ATTAATATTAGGAATAATCGAAAATATATCTCTCCAATCTGTTAATGAAGACGATATAATTTCAGATCTTGTAAAATACT
TCCGTGGAAGAAAAGGGGACAAATCCCCCACTCAAGATGAACTTAAATTAGTAAGTGCACTTGAAAATTATTTAGAATCA
GAAAAAATAAGAGGAAAAAACCGTAAAATACTTATTGCGGATATTAGCAGAATAATAAAAGATAGCAAAAATATTGAACT
TACAGGGGATCCTATAAGTGACTGGCATTTTGTTACTGAGATATTAAAGCAATCAGAATCAAAAGTATTTAAAGATCTAA
TAATTGATGCTTCTAATTTAAAACTTTTATACAGGACATCAAAGATGCTTTCAAAATTAGTAGAGTTATGGCGAGAAAAA
AATAGTTATGTTGGTGCTAGAAGAGTATTCCAAGATTTTATACTACAAGAACATTTTATTGCTTCATCAAATGAAATTAA
CGGGATACATTTAATGACTATACATAAATCTAAAGGAAAAGAATTTGATGAGGTGATCATCTATGAGGGGTTCTACCAAG
AAAGGCTAGTTAGACATAGAAACAATGTTGATAAAGCAAGGTTAAATTTGCGTGTCGCTTGTACTCGTGCACGTAGAAAC
ACATATATATTCACTCCTACAAAAGATCCTTGCATTTTAATTGAGTAG

Upstream 100 bases:

>100_bases
GAAATTCCTAACTATATAATTAGCGTTTTAAATAAGATACGAGAGTTTGTTGAAGGTGAAAGTTAGTCCGTAACTTAATA
TTTGAAAGGAAGAGGTTACT

Downstream 100 bases:

>100_bases
ACTCAAATGAATAGGTATCTGATAGAATTGAAGTGGAATTTGGGTACCTAGATAATTAAATTATTAATTGATGGAGGTTG
ATTAGGTGACCATAATTAAG

Product: UvrD/REP helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 575; Mature: 575

Protein sequence:

>575_residues
MEFSKQQQEFLKAEGNCLVLGGPGSGKTTTSLIKAKNLIKNEHLKNEQKILFLSFARATIARVEEQAGLYESDLINKSIE
VNTYHGFAWNILRSHGYLLNSISPLKILPPQEACSRFSTIRDGKRRRKEKIKLFKEEGVVDFDLFAELCYELLSRSDKLL
NVISSSYPYIILDEFQDTSYDEWRLINILGKRSTLVALADPDQRIYEFRGADPARISDYIKEFEPFQFDFASINNRSNGT
DLIQFGNDLLSGANKSKNYRNVKIIKYDFKKGKGRHSKLKYQTLKVRDKLRKHKKNWSLAILVPTNNLMADVSNYLGSWQ
SFKSGNKLPGLKHHVAVSKEGTLLAAELILGIIENISLQSVNEDDIISDLVKYFRGRKGDKSPTQDELKLVSALENYLES
EKIRGKNRKILIADISRIIKDSKNIELTGDPISDWHFVTEILKQSESKVFKDLIIDASNLKLLYRTSKMLSKLVELWREK
NSYVGARRVFQDFILQEHFIASSNEINGIHLMTIHKSKGKEFDEVIIYEGFYQERLVRHRNNVDKARLNLRVACTRARRN
TYIFTPTKDPCILIE

Sequences:

>Translated_575_residues
MEFSKQQQEFLKAEGNCLVLGGPGSGKTTTSLIKAKNLIKNEHLKNEQKILFLSFARATIARVEEQAGLYESDLINKSIE
VNTYHGFAWNILRSHGYLLNSISPLKILPPQEACSRFSTIRDGKRRRKEKIKLFKEEGVVDFDLFAELCYELLSRSDKLL
NVISSSYPYIILDEFQDTSYDEWRLINILGKRSTLVALADPDQRIYEFRGADPARISDYIKEFEPFQFDFASINNRSNGT
DLIQFGNDLLSGANKSKNYRNVKIIKYDFKKGKGRHSKLKYQTLKVRDKLRKHKKNWSLAILVPTNNLMADVSNYLGSWQ
SFKSGNKLPGLKHHVAVSKEGTLLAAELILGIIENISLQSVNEDDIISDLVKYFRGRKGDKSPTQDELKLVSALENYLES
EKIRGKNRKILIADISRIIKDSKNIELTGDPISDWHFVTEILKQSESKVFKDLIIDASNLKLLYRTSKMLSKLVELWREK
NSYVGARRVFQDFILQEHFIASSNEINGIHLMTIHKSKGKEFDEVIIYEGFYQERLVRHRNNVDKARLNLRVACTRARRN
TYIFTPTKDPCILIE
>Mature_575_residues
MEFSKQQQEFLKAEGNCLVLGGPGSGKTTTSLIKAKNLIKNEHLKNEQKILFLSFARATIARVEEQAGLYESDLINKSIE
VNTYHGFAWNILRSHGYLLNSISPLKILPPQEACSRFSTIRDGKRRRKEKIKLFKEEGVVDFDLFAELCYELLSRSDKLL
NVISSSYPYIILDEFQDTSYDEWRLINILGKRSTLVALADPDQRIYEFRGADPARISDYIKEFEPFQFDFASINNRSNGT
DLIQFGNDLLSGANKSKNYRNVKIIKYDFKKGKGRHSKLKYQTLKVRDKLRKHKKNWSLAILVPTNNLMADVSNYLGSWQ
SFKSGNKLPGLKHHVAVSKEGTLLAAELILGIIENISLQSVNEDDIISDLVKYFRGRKGDKSPTQDELKLVSALENYLES
EKIRGKNRKILIADISRIIKDSKNIELTGDPISDWHFVTEILKQSESKVFKDLIIDASNLKLLYRTSKMLSKLVELWREK
NSYVGARRVFQDFILQEHFIASSNEINGIHLMTIHKSKGKEFDEVIIYEGFYQERLVRHRNNVDKARLNLRVACTRARRN
TYIFTPTKDPCILIE

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

None

Paralogues:

None

Copy number: 3000 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 66220; Mature: 66220

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSKQQQEFLKAEGNCLVLGGPGSGKTTTSLIKAKNLIKNEHLKNEQKILFLSFARATI
CCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
ARVEEQAGLYESDLINKSIEVNTYHGFAWNILRSHGYLLNSISPLKILPPQEACSRFSTI
HHHHHHCCCHHHHHCCCCEEEEEECCHHHHHHHHCCHHHCCCCCCEECCCHHHHHHHHHH
RDGKRRRKEKIKLFKEEGVVDFDLFAELCYELLSRSDKLLNVISSSYPYIILDEFQDTSY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCC
DEWRLINILGKRSTLVALADPDQRIYEFRGADPARISDYIKEFEPFQFDFASINNRSNGT
CCEEEEEEECCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEEHHHCCCCCCCC
DLIQFGNDLLSGANKSKNYRNVKIIKYDFKKGKGRHSKLKYQTLKVRDKLRKHKKNWSLA
HHHHHCHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
ILVPTNNLMADVSNYLGSWQSFKSGNKLPGLKHHVAVSKEGTLLAAELILGIIENISLQS
EEEECCHHHHHHHHHHCCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
VNEDDIISDLVKYFRGRKGDKSPTQDELKLVSALENYLESEKIRGKNRKILIADISRIIK
CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHC
DSKNIELTGDPISDWHFVTEILKQSESKVFKDLIIDASNLKLLYRTSKMLSKLVELWREK
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHC
NSYVGARRVFQDFILQEHFIASSNEINGIHLMTIHKSKGKEFDEVIIYEGFYQERLVRHR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHC
NNVDKARLNLRVACTRARRNTYIFTPTKDPCILIE
CCCCHHHEEEEEEEEECCCCEEEECCCCCCEEEEC
>Mature Secondary Structure
MEFSKQQQEFLKAEGNCLVLGGPGSGKTTTSLIKAKNLIKNEHLKNEQKILFLSFARATI
CCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
ARVEEQAGLYESDLINKSIEVNTYHGFAWNILRSHGYLLNSISPLKILPPQEACSRFSTI
HHHHHHCCCHHHHHCCCCEEEEEECCHHHHHHHHCCHHHCCCCCCEECCCHHHHHHHHHH
RDGKRRRKEKIKLFKEEGVVDFDLFAELCYELLSRSDKLLNVISSSYPYIILDEFQDTSY
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCCC
DEWRLINILGKRSTLVALADPDQRIYEFRGADPARISDYIKEFEPFQFDFASINNRSNGT
CCEEEEEEECCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCCCEEEHHHCCCCCCCC
DLIQFGNDLLSGANKSKNYRNVKIIKYDFKKGKGRHSKLKYQTLKVRDKLRKHKKNWSLA
HHHHHCHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE
ILVPTNNLMADVSNYLGSWQSFKSGNKLPGLKHHVAVSKEGTLLAAELILGIIENISLQS
EEEECCHHHHHHHHHHCCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC
VNEDDIISDLVKYFRGRKGDKSPTQDELKLVSALENYLESEKIRGKNRKILIADISRIIK
CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHC
DSKNIELTGDPISDWHFVTEILKQSESKVFKDLIIDASNLKLLYRTSKMLSKLVELWREK
CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHC
NSYVGARRVFQDFILQEHFIASSNEINGIHLMTIHKSKGKEFDEVIIYEGFYQERLVRHR
CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHC
NNVDKARLNLRVACTRARRNTYIFTPTKDPCILIE
CCCCHHHEEEEEEEEECCCCEEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]