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The map label for this gene is ytxD [H]

Identifier: 188586028

GI number: 188586028

Start: 1473318

End: 1474118

Strand: Direct

Name: ytxD [H]

Synonym: Nther_1402

Alternate gene names: 188586028

Gene position: 1473318-1474118 (Clockwise)

Preceding gene: 188586027

Following gene: 188586029

Centisome position: 46.54

GC content: 38.33

Gene sequence:

>801_bases
ATGGATATTGCCACGATAATAGGATTAATAGCTGGCGTCTTTTTATTAATCGGAGCTGTATTCCTGGAAGGGAATGTGGA
TATTTTTTTCAACATCCCTTCAGCACTAATAGTCATTGGTGGAACTGTAGCTGCTACCTTGATAAGTTATCCTATCAATC
AGTTTTTCTCAATCGTTAAAACAGTACAGAATGCTTTTAAAGTTAAAAGCATGAATCCTACCGAAACTATTAATTTACTG
GTCAACCTAGCTGAAAAAGCCAGAAGGGAAGGCTTACTGGCCTTGGAAGACGATGTAGAAGAAATGGATGATGATTTCTT
GAAAAAAGGTGTTCAGTTGGTTGTGGATGGCACTGATCCAGAACTGGTCAGAAGTATTTTAGAAACGGAATTATCCTTTC
AAGAAGAGCGTCACAAAATAGGTCAAAATATTTTCCGGACTATGGGCACCTTTTCCCCGGCCTTTGGTATGTCTGGAACT
TTGATAGGACTAGTAAGTATGTTGGATGACTTAGATGATCCTGATGCAATAGGTCCAGGGATGGCTTTAGCTCTGTTAAC
TACACTTTACGGTGTAGTAGCTGCTAATTTGATCTTTTTACCCATAGCAAATAAATTAGAAGTTAAAAGCAATGATGAAA
TCTTATTAAAAGAAGTTATGTTAGAAGGTATGTTGAGTATCCAAGCTGGCGAGAATCCTAGAATAGTTGAAGAAAAACTA
AAGGCCTTTTTAGCTCCTAAATCCAGGGATGAAATAGCCGAAGAGGATGAAGAGGTGGTGGACGCCAATGCCGAAATTTA
A

Upstream 100 bases:

>100_bases
ATAGAATATCGTCGCAGGGTGGGATGTCACCCTGCGACGATCCAAATAAAAGATAAAAATCAAGTAAATGCCAACGACAG
TGAGAAATGAGGTGGGAACA

Downstream 100 bases:

>100_bases
TAGGCAACGGCGCAGTGGGAAAGGCAATGATAACAACAAAGGTGGTAGTAACTGGCTTCAAACATACGGGGATATGATCA
CTTTGTTACTGGCCTTTTTC

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDIATIIGLIAGVFLLIGAVFLEGNVDIFFNIPSALIVIGGTVAATLISYPINQFFSIVKTVQNAFKVKSMNPTETINLL
VNLAEKARREGLLALEDDVEEMDDDFLKKGVQLVVDGTDPELVRSILETELSFQEERHKIGQNIFRTMGTFSPAFGMSGT
LIGLVSMLDDLDDPDAIGPGMALALLTTLYGVVAANLIFLPIANKLEVKSNDEILLKEVMLEGMLSIQAGENPRIVEEKL
KAFLAPKSRDEIAEEDEEVVDANAEI

Sequences:

>Translated_266_residues
MDIATIIGLIAGVFLLIGAVFLEGNVDIFFNIPSALIVIGGTVAATLISYPINQFFSIVKTVQNAFKVKSMNPTETINLL
VNLAEKARREGLLALEDDVEEMDDDFLKKGVQLVVDGTDPELVRSILETELSFQEERHKIGQNIFRTMGTFSPAFGMSGT
LIGLVSMLDDLDDPDAIGPGMALALLTTLYGVVAANLIFLPIANKLEVKSNDEILLKEVMLEGMLSIQAGENPRIVEEKL
KAFLAPKSRDEIAEEDEEVVDANAEI
>Mature_266_residues
MDIATIIGLIAGVFLLIGAVFLEGNVDIFFNIPSALIVIGGTVAATLISYPINQFFSIVKTVQNAFKVKSMNPTETINLL
VNLAEKARREGLLALEDDVEEMDDDFLKKGVQLVVDGTDPELVRSILETELSFQEERHKIGQNIFRTMGTFSPAFGMSGT
LIGLVSMLDDLDDPDAIGPGMALALLTTLYGVVAANLIFLPIANKLEVKSNDEILLKEVMLEGMLSIQAGENPRIVEEKL
KAFLAPKSRDEIAEEDEEVVDANAEI

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 28941; Mature: 28941

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIATIIGLIAGVFLLIGAVFLEGNVDIFFNIPSALIVIGGTVAATLISYPINQFFSIVK
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVQNAFKVKSMNPTETINLLVNLAEKARREGLLALEDDVEEMDDDFLKKGVQLVVDGTDP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCEEEECCCCH
ELVRSILETELSFQEERHKIGQNIFRTMGTFSPAFGMSGTLIGLVSMLDDLDDPDAIGPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
MALALLTTLYGVVAANLIFLPIANKLEVKSNDEILLKEVMLEGMLSIQAGENPRIVEEKL
HHHHHHHHHHHHHHHHHHHEECCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KAFLAPKSRDEIAEEDEEVVDANAEI
HHHHCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDIATIIGLIAGVFLLIGAVFLEGNVDIFFNIPSALIVIGGTVAATLISYPINQFFSIVK
CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVQNAFKVKSMNPTETINLLVNLAEKARREGLLALEDDVEEMDDDFLKKGVQLVVDGTDP
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCEEEECCCCH
ELVRSILETELSFQEERHKIGQNIFRTMGTFSPAFGMSGTLIGLVSMLDDLDDPDAIGPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHH
MALALLTTLYGVVAANLIFLPIANKLEVKSNDEILLKEVMLEGMLSIQAGENPRIVEEKL
HHHHHHHHHHHHHHHHHHHEECCCCEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
KAFLAPKSRDEIAEEDEEVVDANAEI
HHHHCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]