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The map label for this gene is ylmD [H]

Identifier: 188585939

GI number: 188585939

Start: 1386155

End: 1386970

Strand: Direct

Name: ylmD [H]

Synonym: Nther_1313

Alternate gene names: 188585939

Gene position: 1386155-1386970 (Clockwise)

Preceding gene: 188585938

Following gene: 188585940

Centisome position: 43.79

GC content: 38.24

Gene sequence:

>816_bases
ATGTTTAACAGAAAGTTACAGTTTGTTGAAGGGTCAAATGGTGTCATTTATATCACCAGCGATTTTTTCGATACAGAGCA
AGTGATGATCGGATTTTCTACTAGATACGGTGGAGTAAGCAAACCCCCATTCAATAGCTTGAATCTCGGGTTTTCCGTCC
CTGATAATCCTGCCAATGTGGTTGAAAATCGCATTCGATTTGTTAAGGCTTTAGGGGCTAATCCGTATCATGCGGTTATA
GGAAATCAAATTCACAGTAATCAGGTAACTGTAGTTAAAGAGCCAGGTTCAATTGATATGATTACAAATCCTGATAGTGG
CATAGCTAACACCGATGGTTTGATTACTGATTCCTCAAACATTATGCTTTTAGGAAGTTTTGCTGATTGTGTTCCATTAT
ACTTTTATGAGCCTGACCGTTCATTAATAGGAATAGTCCATGCAGGTTGGCGTGGGACATGGCAAGGTATTGCCATTCAA
GCAGTTGAGAAAATCAAACAAGAAGGTGGGTCAGTTTCCAGATTGAAAGTGATTATTGGACCATCTATTGGTCCTTGCTG
TTATCAAGTAGGAAAAGAACTTTATGAACAATGGGGAAAAGGAGAAGATAGGGAGCAAGTTTTTAAAAACAAACAAGGAT
ATTGGTTTTTAGACCTTTGGCGTGCAAATAAATTATTATTGAAGAGAGCAGGAGTACCTTCAGAAAATATCTTATCTGGA
GAACTTTGTACTATGTGTAATCATGATTTGCTATTCTCTCATCGCAAGGGAGGCAAATACACCGGAAGGATGATGGGTTT
GATTTCCCTAAAATAA

Upstream 100 bases:

>100_bases
CGCTAGATCTGATTTAGGATACCTGTTATTGTTTAGAGTATATGATATAATATTTTTTAGTTAATAAATTTTAAATACAC
TGCAGCGGAGGAATTATGTT

Downstream 100 bases:

>100_bases
CACATTTTAGCAGGAACTTGAATATATAAAGAGAAATAAATATATATCCCGCGATTACGGAAACTGGAAGGAGGAGGGGG
TTGAAACGAAGAAATAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MFNRKLQFVEGSNGVIYITSDFFDTEQVMIGFSTRYGGVSKPPFNSLNLGFSVPDNPANVVENRIRFVKALGANPYHAVI
GNQIHSNQVTVVKEPGSIDMITNPDSGIANTDGLITDSSNIMLLGSFADCVPLYFYEPDRSLIGIVHAGWRGTWQGIAIQ
AVEKIKQEGGSVSRLKVIIGPSIGPCCYQVGKELYEQWGKGEDREQVFKNKQGYWFLDLWRANKLLLKRAGVPSENILSG
ELCTMCNHDLLFSHRKGGKYTGRMMGLISLK

Sequences:

>Translated_271_residues
MFNRKLQFVEGSNGVIYITSDFFDTEQVMIGFSTRYGGVSKPPFNSLNLGFSVPDNPANVVENRIRFVKALGANPYHAVI
GNQIHSNQVTVVKEPGSIDMITNPDSGIANTDGLITDSSNIMLLGSFADCVPLYFYEPDRSLIGIVHAGWRGTWQGIAIQ
AVEKIKQEGGSVSRLKVIIGPSIGPCCYQVGKELYEQWGKGEDREQVFKNKQGYWFLDLWRANKLLLKRAGVPSENILSG
ELCTMCNHDLLFSHRKGGKYTGRMMGLISLK
>Mature_271_residues
MFNRKLQFVEGSNGVIYITSDFFDTEQVMIGFSTRYGGVSKPPFNSLNLGFSVPDNPANVVENRIRFVKALGANPYHAVI
GNQIHSNQVTVVKEPGSIDMITNPDSGIANTDGLITDSSNIMLLGSFADCVPLYFYEPDRSLIGIVHAGWRGTWQGIAIQ
AVEKIKQEGGSVSRLKVIIGPSIGPCCYQVGKELYEQWGKGEDREQVFKNKQGYWFLDLWRANKLLLKRAGVPSENILSG
ELCTMCNHDLLFSHRKGGKYTGRMMGLISLK

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=252, Percent_Identity=34.1269841269841, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI190194372, Length=252, Percent_Identity=34.1269841269841, Blast_Score=115, Evalue=4e-26,
Organism=Escherichia coli, GI1788945, Length=239, Percent_Identity=33.0543933054393, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 30045; Mature: 30045

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRKLQFVEGSNGVIYITSDFFDTEQVMIGFSTRYGGVSKPPFNSLNLGFSVPDNPANV
CCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHH
VENRIRFVKALGANPYHAVIGNQIHSNQVTVVKEPGSIDMITNPDSGIANTDGLITDSSN
HHHHHHHHHHHCCCCEEEHHCCEECCCEEEEEECCCCEEEEECCCCCCCCCCCEEECCCC
IMLLGSFADCVPLYFYEPDRSLIGIVHAGWRGTWQGIAIQAVEKIKQEGGSVSRLKVIIG
EEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEC
PSIGPCCYQVGKELYEQWGKGEDREQVFKNKQGYWFLDLWRANKLLLKRAGVPSENILSG
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCCCC
ELCTMCNHDLLFSHRKGGKYTGRMMGLISLK
HHHHHCCCCCEEEECCCCCCCCEEEEEEECC
>Mature Secondary Structure
MFNRKLQFVEGSNGVIYITSDFFDTEQVMIGFSTRYGGVSKPPFNSLNLGFSVPDNPANV
CCCCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHH
VENRIRFVKALGANPYHAVIGNQIHSNQVTVVKEPGSIDMITNPDSGIANTDGLITDSSN
HHHHHHHHHHHCCCCEEEHHCCEECCCEEEEEECCCCEEEEECCCCCCCCCCCEEECCCC
IMLLGSFADCVPLYFYEPDRSLIGIVHAGWRGTWQGIAIQAVEKIKQEGGSVSRLKVIIG
EEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEC
PSIGPCCYQVGKELYEQWGKGEDREQVFKNKQGYWFLDLWRANKLLLKRAGVPSENILSG
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCCCC
ELCTMCNHDLLFSHRKGGKYTGRMMGLISLK
HHHHHCCCCCEEEECCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]